Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_4163 |
Symbol | |
ID | 8335517 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 4708860 |
End bp | 4711979 |
Gene Length | 3120 bp |
Protein Length | 1039 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644957266 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_003114868 |
Protein GI | 256393304 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.0226672 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTTGACG ACACGTCCCA CGAAAGCGCG AGCACCGCGG ATCCTCCGCC CAACCGCCGG AGCCTGGAGC AAGCCCAGCC GCCCCGGCGC CATCCCGTCG TGGGCGTCGC CACGGCCCTG CTGCAGGCCG ACGGCCGCAT CGTCCACTGG AGCGCCGCCG CCGAGGCGAT GCTCGGCTAC TCCGCCGCCG AGGCCGAAGG CGCCCTCGCC ATCGACCTGC TCGGCTCCGA ACGGCTCCGC GGCGACATCC TGACCATCTA CGACGCCATC TTGCAGGGCG AGGACTGGAC CGGCGTCTTC CCGGTCCGCC AGCGCGACGG CAACGTGGCC CAGCTGGAGA TCCACACCTA CCGCATCGAC GCCGGCAGCC CGCCGCCGAT GGTCCTGGCC ACCGCGGTGG ACGTGCGCGC CGTCCGCGAG GTCGAAGCCG ACCTGGCCGT CCTGGACAGC TTCTTCAGCC AGTCCCCGGT CGGCATGGCG GTCTACGACA CCGAGACCCG CTTCGTCCAG CTCAACGCCG CCCTCGCGGC CGCGCACGGG ATCTCCGTCG CCGAACACCT CGGCCGCCGC GTCCGCGACG TGCTGCCCGG CGAGGAGGGC ATCCGGGTCG AAGCGCAGGT CCGGCAGGTG CTGGCCACCG GCGTGCCGAT CGCCGACGCC CGCTGGGCCG GACCGACCAA CGGGGACGCC GAACACGGCG ACGCCGTCCA CGACCACACC TGGTCGGCCT GGTACTCCCG GCTCCAGGAC GCCTCCGGCC GGGTCTTCGG CGTCAGCTCG ACCGTCATCG ACGTCACCGA ACGCCACGAG GCCGAGGAAC AAGCCGCCCG CGCCCGCCGT CGCCTGTCCC TGCTGGCCGA GGCCAGCGCC GCGATCGGTG CGACCCTGGA CGTCCGCCAA GCAGCGCGCG AACTGGTCAA GGCGATGGTC CCGGAGATCG CAGACGTCTG CGGTGTCCAC GTCCTGGAGC ATCGCTCCCA GCCCGAATCC GTGGCGGCGC AAGCGGATCC GGAGGCGTAC GTAGCTCGGA GGGTGGCTTT CGACGCCGTC AGCGAGGACT TCCCCTACGA CGACGTCCCG ATCGGCCAAC TGTTACGGCT CGACCCGAAA TCCCCGTACT CCGAAGCGCT GCGCAAGCGC CAGACCGTCG TCGTCGCCCC GTCCGAGATG CCCTCGATCA TCGCCAACCC GACCGGCCGG CTGAGCACGT ACTACGCGCG CCGGGCCCAG ACCGTGCGCG TCTCCCCGCT GGTGGCACGC GGCGCGGTCC TGGGCTTCGT GTCCTACGCG CGCGGTGCTG TCCGCGAACC CTTCGACGAC CAGGACATCA CCCTCGGCGA GGACCTGATC GCCCGCGCCG CCACCGCCTT CGACAACGCC CTGCTGTTTC AACGCGAGCG CGAGACAGCA CTGGCCCGGC AGGAGACGCT GCGCCAAGCC AACGCCGCCC AAGGACGCCT GGCGCTGCTC AACGACGCCA GCGTCCGCAT CGGTACCACG CTGGACCTGC AACGCACCGC CGAGGAACTC ATCGAGGTGG TGCTGCCGCG CTTCGCGGAC TTCGCAACCG TGGACCTGCT CGTCTCGGTC ATGCGCGGCG ACGAACCCGC CTCACCGCTG CCCGGTGAGC CGGTGGTCGT GCAAGCCGTC GCCGTCGCAG AGTCCTTCCC CTCCGGACTG ACAGAGGTCG CTGACGCAGT CGGAAAGACC TCCACCCGCG ACGCCGCCAA GGGCTACGCA CGCAGCCTGC GCAGCGGACG TCCCATGGTG ATCCCCATCG TCGATGAGGA ATCGCTGGCC TCCCTCGCCT CCTCCCCGGA GCGCGTCGCC GGAGGTCTGG CCGCAGGTAT CCACTCCTAC CTGATGGTTC CGCTGCTCGC GCGCGGCGTC GTGCTCGGCG GCGCGGAGTT CATCCGCATG CAGGACCGCG AGCCGTTCGG TCGCGCGGAC GTCGCGCTGG CAGAGGAACT GGCGGCGCGC GCCGCGCTGT GTATGGACAA CGCGCGCCTG TATCGCAGGG AACGTAGAAC CGCGCTGACG CTGCAACGCA GCCTTCTGCC ACAGAACGTG CACCACACGA TCGGCATGGA GATCGCGCAC CGCTACCTGC CCAGCAGCCG GGTCAGCGAG GTCGGCGGCG ACTGGTTCGA CGTCGTCCCG CTCTCGTGCG GCCGGGTGGC GCTGCTGGTC GGCGACGTGA TGGGACACGG CATCCGGGCC GCGGCGACGA TGGGGCAGTT GCGCACGGTG GCCCGGACGC TGGCGACCTT GGACATGGAG CCCGAGCAGG TGCTGACCCG CCTGGACGCG ACTGCCGCCA ACAGCGGCGA CGACCAGTTC GCGACGTGCG TGTGCGCGGT GTACGACCCG GTGGAGCGCT CCGGCGTGAT CGCCTCGGCC GGTCACCTGC CGCCGGTGAT CGTGGCGCCG GACGGGACGA CCACCGTGCT CGACGTCCCG CCGGGACCGC CGCTGGGGGT CGGGGGCGTG CCGTTCGAGA GCGTGGAGTT CGTCCTGCCC GAGCGCAGCG TGATGGCGAT GTACACCGAT GGTCTGGTCG AGCGCCGCGG CCGCGATCTC GACGAGGGGA TCAGCCTGCT GCGACAAGCG CTGACACAGC GCGACCGGCC CTTGGAAGAG GCCTGCGACG CCGTGCTGGC GGCACTGGTC CCCGGCGGCG CCGAGGACGA CGTGGCGCTG ATCATGGCCA AGACCGTCTC GCTGGCCGGG GACCGGGTCG CCACCCTGGC GCTGTCCGGC GACCGCCGCA TGGCCGGCCA GGCGCGCAGC TTCACCCGCG GCAAACTCCG CGACTGGGGA CTGGCATCCC TCACCGACCT GGCCGAACTC CTGGTCAGCG AACTGGTGAC CAATGCCCTG ACCCACACCG GCCACCCCCG CCAACTCCGC CTGTTCTGCG ACCGCACCCT CACCGTCGAG GTCGCCGACT CCGACCCCCG AGCCCCCACC GCCCGCGGCT TCACCGACTA CGAGGAAAGC GGCCGCGGCA TCCAACTGGT CGACGAACTG TCCCGCCGCT GGGGCAGTCG CATCACCCGG CACGGCAAGG TGGTCTGGTT CGAGCTGGAG ATCCCGTCCG GCGCGCCGAC GGAGCATTAG
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Protein sequence | MVDDTSHESA STADPPPNRR SLEQAQPPRR HPVVGVATAL LQADGRIVHW SAAAEAMLGY SAAEAEGALA IDLLGSERLR GDILTIYDAI LQGEDWTGVF PVRQRDGNVA QLEIHTYRID AGSPPPMVLA TAVDVRAVRE VEADLAVLDS FFSQSPVGMA VYDTETRFVQ LNAALAAAHG ISVAEHLGRR VRDVLPGEEG IRVEAQVRQV LATGVPIADA RWAGPTNGDA EHGDAVHDHT WSAWYSRLQD ASGRVFGVSS TVIDVTERHE AEEQAARARR RLSLLAEASA AIGATLDVRQ AARELVKAMV PEIADVCGVH VLEHRSQPES VAAQADPEAY VARRVAFDAV SEDFPYDDVP IGQLLRLDPK SPYSEALRKR QTVVVAPSEM PSIIANPTGR LSTYYARRAQ TVRVSPLVAR GAVLGFVSYA RGAVREPFDD QDITLGEDLI ARAATAFDNA LLFQRERETA LARQETLRQA NAAQGRLALL NDASVRIGTT LDLQRTAEEL IEVVLPRFAD FATVDLLVSV MRGDEPASPL PGEPVVVQAV AVAESFPSGL TEVADAVGKT STRDAAKGYA RSLRSGRPMV IPIVDEESLA SLASSPERVA GGLAAGIHSY LMVPLLARGV VLGGAEFIRM QDREPFGRAD VALAEELAAR AALCMDNARL YRRERRTALT LQRSLLPQNV HHTIGMEIAH RYLPSSRVSE VGGDWFDVVP LSCGRVALLV GDVMGHGIRA AATMGQLRTV ARTLATLDME PEQVLTRLDA TAANSGDDQF ATCVCAVYDP VERSGVIASA GHLPPVIVAP DGTTTVLDVP PGPPLGVGGV PFESVEFVLP ERSVMAMYTD GLVERRGRDL DEGISLLRQA LTQRDRPLEE ACDAVLAALV PGGAEDDVAL IMAKTVSLAG DRVATLALSG DRRMAGQARS FTRGKLRDWG LASLTDLAEL LVSELVTNAL THTGHPRQLR LFCDRTLTVE VADSDPRAPT ARGFTDYEES GRGIQLVDEL SRRWGSRITR HGKVVWFELE IPSGAPTEH
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