Gene Caci_4160 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_4160 
Symbol 
ID8335514 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand- 
Start bp4705792 
End bp4706460 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content66% 
IMG OID644957263 
Producttranscriptional regulator, PadR-like family 
Protein accessionYP_003114865 
Protein GI256393301 
COG category[K] Transcription 
COG ID[COG1695] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.354182 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.0431624 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCCGTCA AGCACTCTCT TTTGGCTGTC CTTGCTGATG GCGATCGTTA TGGCTATCAG 
CTTCGGGCTG AGTTCGAGGA GCGGACGGGG GCTACGTGGC CGCTCAATAT CGGGCAGGTG 
TACACGACGT TGAGTCGGTT GGAGCGGGAT GGGTTGGTGG AGCCTGCTGG GCAGGATGGC 
GCGAATCATG TGTTCTATCG GATCACCGGG GCTGGGCGCG ATGAGTTGTT CGCTTGGTTC 
GCGCGGCCGG TGACGCGGGC GGAGCGGCCT CGGGATGAGC TGGCGGTGAA GCTGGCGCTC 
GCCGTGACGG TGGACGGGGT TGATGTGCCG GGGATCGTGC ACGCTCAGCG CAAGCATGCT 
TTGGCCGCGT TGCAGGACTA CACGCGGGTC AAGGCGCGGC TGGATGTCGG GGAGTTGGCC 
GCCTCGCTGG TGCTGGAGTC GATGATCTTC CAGTGCGAGG CGGAGATCCG GTGGCTGGAC 
CACGTTGAGG CGCGGGTGCT GCGGCACGCG CGGGAGGGCC GGGGTCGGTC GCACGGCGTC 
GACAACGGCG TCGACAACGG GACCGACAAC GGAGCGAGTA CCAGCGCCGC CACACGTACC 
GGAAACAGCA GCACCACGCA CGAAACCGCC GCACCAGTCG TCGCCACCAC GGAGGGGAAA 
TCCATATGA
 
Protein sequence
MSVKHSLLAV LADGDRYGYQ LRAEFEERTG ATWPLNIGQV YTTLSRLERD GLVEPAGQDG 
ANHVFYRITG AGRDELFAWF ARPVTRAERP RDELAVKLAL AVTVDGVDVP GIVHAQRKHA 
LAALQDYTRV KARLDVGELA ASLVLESMIF QCEAEIRWLD HVEARVLRHA REGRGRSHGV 
DNGVDNGTDN GASTSAATRT GNSSTTHETA APVVATTEGK SI