Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_4117 |
Symbol | |
ID | 8335471 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 4651158 |
End bp | 4655924 |
Gene Length | 4767 bp |
Protein Length | 1588 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644957220 |
Product | GAF sensor hybrid histidine kinase |
Protein accession | YP_003114822 |
Protein GI | 256393258 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0887298 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACGACA GGGCTGAGCG TGCAGCCTCC ACCGTGCGGA TCGGTATGCC GGGCGGGGCG GAGGAATCCG AGGCGCCGGG CCTGAGCCAG CTCCTGGCCG GGCTGACCGC GGTGCGCGAC GGCGACTTCG GCACCCGGCT GCCCGAGGAC GGCGACGGGC TGCTGGTCGA GATCGCGACG GTGTTCAACG GCATGGTGGA CCAGCTCTCG CTGTTCACCT CCGAGGTGAC CCGGGTGGCC CGGGAGGTCG GCACGGACGG CCGGCTCGGC GGCCAGGCCG AGGTGCCGGG GGTGTCCGGG ACCTGGAAGG ACCTCACCGA TTCGGTGAAC GCCATGGCCG GGAACCTGAC GACCCAGGTC CGCGACATCG CCCAGGTGGC GACCGCGGTG GCCAAGGGCG ACCTGTCGCA GAAGATCGAC GTGGACGCCC GCGGGGAGAT CCTGGAGCTG AAGAACACCT TGAACACGAT GGTGGACCAG TTGTCCTCCT TCGCCGACGA GGTGACGCGC GTGGCGCGCG AGGTCGGTAC CGAGGGGCGC CTGGGAGGCC AGGCGGACGT CAAGGGCGTC TCCGGGACCT GGAAAGACCT CACCGAATCG GTGAACTTCA TGGCGAACAA CCTCACCGAC CAGGTGCGCT CGATCGCCGA GGTCACCACC GCGGTGGCCA AGGGCGATCT GTCGCAGAAG ATCACGGTCG ACGCCCGCGG CGAGATCCTG CAGTTGAAGA GCACGATCAA CACGATGGTC GACCAGCTCT CCGCCTTCGC CGACGAGGTG ACGCGCGTCG CCCGCGAGGT CGGTACCGAG GGCATGCTCG GCGGGCAGGC CCAGGTCCCC GGCGTCGCCG GGACCTGGCG CGACCTCACC GACTCGGTGA ACTTCATGGC GGGCAACCTC ACCGCGCAGG TGCGCTCCAT CGCGCAGGTC GCGACGGCGG TGGCCAAGGG CGACCTGACG CGCACCATCG ACGTCGACGC TCGCGGGGAG ATCCTGGAGC TGAAGAACAC CTTGAACACG ATGGTGGACC AGCTGTCCTC CTTCGCCGAC GAGGTGACCC GAGTCGCGCG CGAGGTCGGT ACCGACGGCC GCCTCGGCGG TCAGGCGGAC GTCAAGGGCG TCTCCGGGAC CTGGAAAGAC CTCACCGAAT CGGTCAACGT CATGGCCGAC AACCTCACCG CGCAGGTGCG CTCGATCGCC GAGGTCACCA CGGCCGTGGC CAAGGGCGAC CTGTCGCAGA AGATCCGCGT CGACGCGCGC GGGGAGATCC TGGAGCTGAA GGAGACCATC AACACGATGG TCGACCAGCT CTCCGCGTTC GCCGACGAGG TCACCCGCGT CGCGCGCGAG GTCGGGACCG AGGGCAACCT CGGCGGCCAG GCGACGGTGC GCGGCGTGTC CGGGACCTGG AAGGACCTGA CCGACAACGT CAACGTCATG GCCTCCAACC TGACCGGCCA GGTGCGCTCC ATCGCGCAGG TCGCCTCCGC GGTGGCCAAG GGCGACCTGT CGCAGAAGAT CACGGTCGAG GCCAAGGGCG AGGTCGCGGC GCTCGCCGAG GTGATCAACA CCATGGTCGA CACGCTGTCG GCGTTCGCCT CCGAGGTGAC CCGCGTCGCG CGCGAGGTCG GTACCGAGGG CACGCTCGGC GGCCAGGCTC GCGTCTCCAA CGTCGCCGGG ACCTGGAAGG ACCTGACCGA CAACGTCAAC TTCATGGCGA ACAACCTGAC CAACCAGGTG CGCAACATCG CGCAGGTCAC CACGGCGGTC GCGCAGGGCG ACCTGACGCG CAAGATCGAC GTGGACGCGC GCGGGGAGAT CCTGGAGCTG AAGACGACCA TCAACACGAT GGTCGACCAG CTGTCCTCCT TCGCCGCCGA GGTCACGCGT GTCGCGCGCG AGGTCGGCAG CGAGGGCCGG CTCGGCGGGC AGGCCGAGGT CGAGGGCGTG TCCGGGACCT GGAAGCGGCT CACCGAGAAC GTCAACGAGC TCGCCGGGAA CCTGACCCGG CAGGTGCGCG CGATCGCCGG GGTGACCAGC GCGGTCGCCG AGGGCGACCT GACGCGCTCG ATCACCGTGG ACGCCTCCGG CGAGGTCGCC GAGCTCAAGG ACAACATCAA CTCGATGGTG AAGTCCCTGC GCGAGACCAC CCGGGCCAAC CACGATCAGG ACTGGCTGAA GTCCAACCTG GCGCGGATCT CCGGTCTCAT GCAGGGCCGC CGGGACCTGG CGGTGGTCGC CGAGCTGGTG ATGGACGAGC TCACCCCGCT GGTCGGCGCG CAGTACGGCG CGTTCTTCCT GGCCGAGGAC GCCGCCGACG GCAGCGGGAT CGAGCTGCGC TTGATCAGCT CCTACGGCGA CCCCGGCGAC GACCGGCCGA CGCGCTTCCG CCTGGGTCAG TCGCTGGTCG GGCAGGCGGC GCGCAGCAAG CGCGTCATCG CCATCGACGA CGTGCCCGGT GATTACGTCG CGCTCGGGTC GGGGCTGGGG CGTACCGCCG CGGCGAGCCT GGTGGTGCTG CCGATAGCGG TCGAGGACCA GGTGCTCGGG GTCATCGAGC TGGCGTCGAT GCACCGGTTC ACGCCGGTGC ACCGGGCGTT CCTGGAGCAG CTGATGGAGA CGGTCGGGGT GAACGTCAAC ACCATCGTCG CCAACGCCCG CACCGACGAG CTGCTCGGCG AGTCCCAGCG TCTGGCCGCC GAACTTCAGG CGCGCTCGGG CGAGCTTCAG GTGCGGCAGG AGCAGTTGCA GACGTCGAAC GCCGAGCTGG AGGAGAAGGC CGCGCTGCTG GCCAGCCAGA ACCGCGACAT CGAGACCAAG AACCTGGAGA TCGAGCAGGC GCGGCAGGAG CTGGAGACGC GCGCGCAGCA GCTGTCGCTG GCGTCGAAGT ACAAGTCGGA GTTCCTGGCG AACATGAGCC ACGAGCTGCG CACGCCGCTG AACAGCCTGC TGATCCTGGC GCAGCTGCTG GCGCAGAACT CCAACCGGAA CCTGACGCCG AAGCAGGTCG AGTACGCCGG CGTCATCCAC TCCGCCGGCT CGGACCTGCT GCAGCTGATC GACGACATCC TGGACCTGTC CAAGGTCGAG GCCGGGAAGA TGAACGTCGA CCCCGAACGC GTCTCGTTGC AGCGGCTGCT GGACTACGTC GAGGCCACGT TCCACCCGCT GACGACGCAG AAGGGCCTGG AGTTCAGTGT CCGGACCGCC AGCGGGATGC CGGGGCAGAT GCTCACCGAC GACTCGCGGC TGCGGCAGGT GCTGCGGAAC CTGCTGTCGA ACGCGGTGAA GTTCACCGAG ACCGGCGGCG TCGAGCTGAG CATCGAGCCG GCCGCGCCCG AGGAGCTGCC TTTGGGCGTG CGCGACAGCG GTCCGGCGCT GGCGTTCCGG GTGAAGGACA CCGGGATCGG GATTCCCGAG CAGCAGCTGG AGACGATCTT CGGTGCTTTC CAGCAGGCCG ATGGCACGAC CAGCCGCAAG TACGGCGGGA CGGGACTGGG GCTGTCGATC AGCCGGGAGA TCGCGCAGCT GCTGGGCGGC GCTATCACCG CGCAGAGCGC GCTCGGCGAA GGCAGTACGT TCACTCTCTA TCTGCCGATC GAGCATCCGG ACTGGGCTGA TCCGCCGGCT TCGGACGGTG GTCAGTTCGG CGACGCCGCG ACCGGGCAGG TTGTCGCCGG GGAGCTGGTC AAGACCATCT CTGGAGCTGG TGGCGGCGCC TCCGCGGGGT CGGGGTCTAT GGCGTCCGTC GGGTCTATGA CGTCCGTCGG GTCGATCGGG TCGATCGGGT CCGTCGGGTC TAACGGGTCC ACGGGGTCGA TCGGGTCCGC CGGGTCGATC GCGTCCGCCG GTGTCGCCGC GGGCGGCGCG CGTCGGCCGG GATCCGAGCG TGCGGTCACC GGGACCTCGT CCCGGCGCCT CCTCGTCGTG GAGGACCGGG CGCGCGGGTT GTTGTCGCTG GTCGCCGAGA GTGCGGCCGA GGACCTGCTC GCCGGACGGG AGCGGCTGGG CCCGCAAGCC CGCGTGCAGA TCCGGACCGC GGTCGGGGCG CAGGAGGCGG CGGCGATGCT CGCTGCCGAG CCGCACCACT GCGTGGTCCT GGAACTGGAC ATGGCGCAGG ACGGCGCGGC GCTGTTCCTG CAGGCGCGTA CCGCGGACCC CGCCCTGCAC TCGATCCCGA TCCTGGCCCA CCACAACAGG ACACTGCGAA GCGACCAAGA ACGCCTGCTG CGCGCGCACG CCGAGCTGTA CCCGCTGGAG CTGCTCCCGA GCCTGGACGA ACTGCGCGAG CGCATCGTCC TGCACTTGGG CGCCGAGCAC CCCGACGACG TCGTCCCGCT GCCCCAGCCC GGCCGCGAAC GCCCCGCCGA ACTCCCCGAC AGCGGCGGCC TGCTGGCCGG CCGCAGCGTC CTGGTCATCG ACGACGACGC CCGCAACCTG TTCGCCCTGA CCGGCATGCT GGAGATGCAC GGCATGCGCG TCGTCGACGC CGAGGACGGC GTCAAGGGCA TCCAGGCCCT GCAGAACGAC CCCCGCATCG AGGTGATCCT GATGGACGTG ATGATGCCCG AAATGGACGG CTACGAGGCC ACCGCCCGCA TCCGCACCAT GCCCGAGCAC GCCGACCTCC CCATCATCGC CGTCACAGCC AAAGCCATGA ACGGCGACCG AGAAAAGAGC CTGGCCGCCG GCGCCAACGA CTACGTCACC AAACCCGTCG ACGCCGCCGT CCTCATCGAG AGCATCCAAC GGGTCCTAGG CCTGTGA
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Protein sequence | MDDRAERAAS TVRIGMPGGA EESEAPGLSQ LLAGLTAVRD GDFGTRLPED GDGLLVEIAT VFNGMVDQLS LFTSEVTRVA REVGTDGRLG GQAEVPGVSG TWKDLTDSVN AMAGNLTTQV RDIAQVATAV AKGDLSQKID VDARGEILEL KNTLNTMVDQ LSSFADEVTR VAREVGTEGR LGGQADVKGV SGTWKDLTES VNFMANNLTD QVRSIAEVTT AVAKGDLSQK ITVDARGEIL QLKSTINTMV DQLSAFADEV TRVAREVGTE GMLGGQAQVP GVAGTWRDLT DSVNFMAGNL TAQVRSIAQV ATAVAKGDLT RTIDVDARGE ILELKNTLNT MVDQLSSFAD EVTRVAREVG TDGRLGGQAD VKGVSGTWKD LTESVNVMAD NLTAQVRSIA EVTTAVAKGD LSQKIRVDAR GEILELKETI NTMVDQLSAF ADEVTRVARE VGTEGNLGGQ ATVRGVSGTW KDLTDNVNVM ASNLTGQVRS IAQVASAVAK GDLSQKITVE AKGEVAALAE VINTMVDTLS AFASEVTRVA REVGTEGTLG GQARVSNVAG TWKDLTDNVN FMANNLTNQV RNIAQVTTAV AQGDLTRKID VDARGEILEL KTTINTMVDQ LSSFAAEVTR VAREVGSEGR LGGQAEVEGV SGTWKRLTEN VNELAGNLTR QVRAIAGVTS AVAEGDLTRS ITVDASGEVA ELKDNINSMV KSLRETTRAN HDQDWLKSNL ARISGLMQGR RDLAVVAELV MDELTPLVGA QYGAFFLAED AADGSGIELR LISSYGDPGD DRPTRFRLGQ SLVGQAARSK RVIAIDDVPG DYVALGSGLG RTAAASLVVL PIAVEDQVLG VIELASMHRF TPVHRAFLEQ LMETVGVNVN TIVANARTDE LLGESQRLAA ELQARSGELQ VRQEQLQTSN AELEEKAALL ASQNRDIETK NLEIEQARQE LETRAQQLSL ASKYKSEFLA NMSHELRTPL NSLLILAQLL AQNSNRNLTP KQVEYAGVIH SAGSDLLQLI DDILDLSKVE AGKMNVDPER VSLQRLLDYV EATFHPLTTQ KGLEFSVRTA SGMPGQMLTD DSRLRQVLRN LLSNAVKFTE TGGVELSIEP AAPEELPLGV RDSGPALAFR VKDTGIGIPE QQLETIFGAF QQADGTTSRK YGGTGLGLSI SREIAQLLGG AITAQSALGE GSTFTLYLPI EHPDWADPPA SDGGQFGDAA TGQVVAGELV KTISGAGGGA SAGSGSMASV GSMTSVGSIG SIGSVGSNGS TGSIGSAGSI ASAGVAAGGA RRPGSERAVT GTSSRRLLVV EDRARGLLSL VAESAAEDLL AGRERLGPQA RVQIRTAVGA QEAAAMLAAE PHHCVVLELD MAQDGAALFL QARTADPALH SIPILAHHNR TLRSDQERLL RAHAELYPLE LLPSLDELRE RIVLHLGAEH PDDVVPLPQP GRERPAELPD SGGLLAGRSV LVIDDDARNL FALTGMLEMH GMRVVDAEDG VKGIQALQND PRIEVILMDV MMPEMDGYEA TARIRTMPEH ADLPIIAVTA KAMNGDREKS LAAGANDYVT KPVDAAVLIE SIQRVLGL
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