| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4117 |
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| Symbol | |
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| ID | 8335471 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 4651158 |
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| End bp | 4655924 |
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| Gene Length | 4767 bp |
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| Protein Length | 1588 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644957220 |
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| Product | GAF sensor hybrid histidine kinase |
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| Protein accession | YP_003114822 |
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| Protein GI | 256393258 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0887298 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGACA GGGCTGAGCG TGCAGCCTCC ACCGTGCGGA TCGGTATGCC GGGCGGGGCG
GAGGAATCCG AGGCGCCGGG CCTGAGCCAG CTCCTGGCCG GGCTGACCGC GGTGCGCGAC
GGCGACTTCG GCACCCGGCT GCCCGAGGAC GGCGACGGGC TGCTGGTCGA GATCGCGACG
GTGTTCAACG GCATGGTGGA CCAGCTCTCG CTGTTCACCT CCGAGGTGAC CCGGGTGGCC
CGGGAGGTCG GCACGGACGG CCGGCTCGGC GGCCAGGCCG AGGTGCCGGG GGTGTCCGGG
ACCTGGAAGG ACCTCACCGA TTCGGTGAAC GCCATGGCCG GGAACCTGAC GACCCAGGTC
CGCGACATCG CCCAGGTGGC GACCGCGGTG GCCAAGGGCG ACCTGTCGCA GAAGATCGAC
GTGGACGCCC GCGGGGAGAT CCTGGAGCTG AAGAACACCT TGAACACGAT GGTGGACCAG
TTGTCCTCCT TCGCCGACGA GGTGACGCGC GTGGCGCGCG AGGTCGGTAC CGAGGGGCGC
CTGGGAGGCC AGGCGGACGT CAAGGGCGTC TCCGGGACCT GGAAAGACCT CACCGAATCG
GTGAACTTCA TGGCGAACAA CCTCACCGAC CAGGTGCGCT CGATCGCCGA GGTCACCACC
GCGGTGGCCA AGGGCGATCT GTCGCAGAAG ATCACGGTCG ACGCCCGCGG CGAGATCCTG
CAGTTGAAGA GCACGATCAA CACGATGGTC GACCAGCTCT CCGCCTTCGC CGACGAGGTG
ACGCGCGTCG CCCGCGAGGT CGGTACCGAG GGCATGCTCG GCGGGCAGGC CCAGGTCCCC
GGCGTCGCCG GGACCTGGCG CGACCTCACC GACTCGGTGA ACTTCATGGC GGGCAACCTC
ACCGCGCAGG TGCGCTCCAT CGCGCAGGTC GCGACGGCGG TGGCCAAGGG CGACCTGACG
CGCACCATCG ACGTCGACGC TCGCGGGGAG ATCCTGGAGC TGAAGAACAC CTTGAACACG
ATGGTGGACC AGCTGTCCTC CTTCGCCGAC GAGGTGACCC GAGTCGCGCG CGAGGTCGGT
ACCGACGGCC GCCTCGGCGG TCAGGCGGAC GTCAAGGGCG TCTCCGGGAC CTGGAAAGAC
CTCACCGAAT CGGTCAACGT CATGGCCGAC AACCTCACCG CGCAGGTGCG CTCGATCGCC
GAGGTCACCA CGGCCGTGGC CAAGGGCGAC CTGTCGCAGA AGATCCGCGT CGACGCGCGC
GGGGAGATCC TGGAGCTGAA GGAGACCATC AACACGATGG TCGACCAGCT CTCCGCGTTC
GCCGACGAGG TCACCCGCGT CGCGCGCGAG GTCGGGACCG AGGGCAACCT CGGCGGCCAG
GCGACGGTGC GCGGCGTGTC CGGGACCTGG AAGGACCTGA CCGACAACGT CAACGTCATG
GCCTCCAACC TGACCGGCCA GGTGCGCTCC ATCGCGCAGG TCGCCTCCGC GGTGGCCAAG
GGCGACCTGT CGCAGAAGAT CACGGTCGAG GCCAAGGGCG AGGTCGCGGC GCTCGCCGAG
GTGATCAACA CCATGGTCGA CACGCTGTCG GCGTTCGCCT CCGAGGTGAC CCGCGTCGCG
CGCGAGGTCG GTACCGAGGG CACGCTCGGC GGCCAGGCTC GCGTCTCCAA CGTCGCCGGG
ACCTGGAAGG ACCTGACCGA CAACGTCAAC TTCATGGCGA ACAACCTGAC CAACCAGGTG
CGCAACATCG CGCAGGTCAC CACGGCGGTC GCGCAGGGCG ACCTGACGCG CAAGATCGAC
GTGGACGCGC GCGGGGAGAT CCTGGAGCTG AAGACGACCA TCAACACGAT GGTCGACCAG
CTGTCCTCCT TCGCCGCCGA GGTCACGCGT GTCGCGCGCG AGGTCGGCAG CGAGGGCCGG
CTCGGCGGGC AGGCCGAGGT CGAGGGCGTG TCCGGGACCT GGAAGCGGCT CACCGAGAAC
GTCAACGAGC TCGCCGGGAA CCTGACCCGG CAGGTGCGCG CGATCGCCGG GGTGACCAGC
GCGGTCGCCG AGGGCGACCT GACGCGCTCG ATCACCGTGG ACGCCTCCGG CGAGGTCGCC
GAGCTCAAGG ACAACATCAA CTCGATGGTG AAGTCCCTGC GCGAGACCAC CCGGGCCAAC
CACGATCAGG ACTGGCTGAA GTCCAACCTG GCGCGGATCT CCGGTCTCAT GCAGGGCCGC
CGGGACCTGG CGGTGGTCGC CGAGCTGGTG ATGGACGAGC TCACCCCGCT GGTCGGCGCG
CAGTACGGCG CGTTCTTCCT GGCCGAGGAC GCCGCCGACG GCAGCGGGAT CGAGCTGCGC
TTGATCAGCT CCTACGGCGA CCCCGGCGAC GACCGGCCGA CGCGCTTCCG CCTGGGTCAG
TCGCTGGTCG GGCAGGCGGC GCGCAGCAAG CGCGTCATCG CCATCGACGA CGTGCCCGGT
GATTACGTCG CGCTCGGGTC GGGGCTGGGG CGTACCGCCG CGGCGAGCCT GGTGGTGCTG
CCGATAGCGG TCGAGGACCA GGTGCTCGGG GTCATCGAGC TGGCGTCGAT GCACCGGTTC
ACGCCGGTGC ACCGGGCGTT CCTGGAGCAG CTGATGGAGA CGGTCGGGGT GAACGTCAAC
ACCATCGTCG CCAACGCCCG CACCGACGAG CTGCTCGGCG AGTCCCAGCG TCTGGCCGCC
GAACTTCAGG CGCGCTCGGG CGAGCTTCAG GTGCGGCAGG AGCAGTTGCA GACGTCGAAC
GCCGAGCTGG AGGAGAAGGC CGCGCTGCTG GCCAGCCAGA ACCGCGACAT CGAGACCAAG
AACCTGGAGA TCGAGCAGGC GCGGCAGGAG CTGGAGACGC GCGCGCAGCA GCTGTCGCTG
GCGTCGAAGT ACAAGTCGGA GTTCCTGGCG AACATGAGCC ACGAGCTGCG CACGCCGCTG
AACAGCCTGC TGATCCTGGC GCAGCTGCTG GCGCAGAACT CCAACCGGAA CCTGACGCCG
AAGCAGGTCG AGTACGCCGG CGTCATCCAC TCCGCCGGCT CGGACCTGCT GCAGCTGATC
GACGACATCC TGGACCTGTC CAAGGTCGAG GCCGGGAAGA TGAACGTCGA CCCCGAACGC
GTCTCGTTGC AGCGGCTGCT GGACTACGTC GAGGCCACGT TCCACCCGCT GACGACGCAG
AAGGGCCTGG AGTTCAGTGT CCGGACCGCC AGCGGGATGC CGGGGCAGAT GCTCACCGAC
GACTCGCGGC TGCGGCAGGT GCTGCGGAAC CTGCTGTCGA ACGCGGTGAA GTTCACCGAG
ACCGGCGGCG TCGAGCTGAG CATCGAGCCG GCCGCGCCCG AGGAGCTGCC TTTGGGCGTG
CGCGACAGCG GTCCGGCGCT GGCGTTCCGG GTGAAGGACA CCGGGATCGG GATTCCCGAG
CAGCAGCTGG AGACGATCTT CGGTGCTTTC CAGCAGGCCG ATGGCACGAC CAGCCGCAAG
TACGGCGGGA CGGGACTGGG GCTGTCGATC AGCCGGGAGA TCGCGCAGCT GCTGGGCGGC
GCTATCACCG CGCAGAGCGC GCTCGGCGAA GGCAGTACGT TCACTCTCTA TCTGCCGATC
GAGCATCCGG ACTGGGCTGA TCCGCCGGCT TCGGACGGTG GTCAGTTCGG CGACGCCGCG
ACCGGGCAGG TTGTCGCCGG GGAGCTGGTC AAGACCATCT CTGGAGCTGG TGGCGGCGCC
TCCGCGGGGT CGGGGTCTAT GGCGTCCGTC GGGTCTATGA CGTCCGTCGG GTCGATCGGG
TCGATCGGGT CCGTCGGGTC TAACGGGTCC ACGGGGTCGA TCGGGTCCGC CGGGTCGATC
GCGTCCGCCG GTGTCGCCGC GGGCGGCGCG CGTCGGCCGG GATCCGAGCG TGCGGTCACC
GGGACCTCGT CCCGGCGCCT CCTCGTCGTG GAGGACCGGG CGCGCGGGTT GTTGTCGCTG
GTCGCCGAGA GTGCGGCCGA GGACCTGCTC GCCGGACGGG AGCGGCTGGG CCCGCAAGCC
CGCGTGCAGA TCCGGACCGC GGTCGGGGCG CAGGAGGCGG CGGCGATGCT CGCTGCCGAG
CCGCACCACT GCGTGGTCCT GGAACTGGAC ATGGCGCAGG ACGGCGCGGC GCTGTTCCTG
CAGGCGCGTA CCGCGGACCC CGCCCTGCAC TCGATCCCGA TCCTGGCCCA CCACAACAGG
ACACTGCGAA GCGACCAAGA ACGCCTGCTG CGCGCGCACG CCGAGCTGTA CCCGCTGGAG
CTGCTCCCGA GCCTGGACGA ACTGCGCGAG CGCATCGTCC TGCACTTGGG CGCCGAGCAC
CCCGACGACG TCGTCCCGCT GCCCCAGCCC GGCCGCGAAC GCCCCGCCGA ACTCCCCGAC
AGCGGCGGCC TGCTGGCCGG CCGCAGCGTC CTGGTCATCG ACGACGACGC CCGCAACCTG
TTCGCCCTGA CCGGCATGCT GGAGATGCAC GGCATGCGCG TCGTCGACGC CGAGGACGGC
GTCAAGGGCA TCCAGGCCCT GCAGAACGAC CCCCGCATCG AGGTGATCCT GATGGACGTG
ATGATGCCCG AAATGGACGG CTACGAGGCC ACCGCCCGCA TCCGCACCAT GCCCGAGCAC
GCCGACCTCC CCATCATCGC CGTCACAGCC AAAGCCATGA ACGGCGACCG AGAAAAGAGC
CTGGCCGCCG GCGCCAACGA CTACGTCACC AAACCCGTCG ACGCCGCCGT CCTCATCGAG
AGCATCCAAC GGGTCCTAGG CCTGTGA
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| Protein sequence | MDDRAERAAS TVRIGMPGGA EESEAPGLSQ LLAGLTAVRD GDFGTRLPED GDGLLVEIAT
VFNGMVDQLS LFTSEVTRVA REVGTDGRLG GQAEVPGVSG TWKDLTDSVN AMAGNLTTQV
RDIAQVATAV AKGDLSQKID VDARGEILEL KNTLNTMVDQ LSSFADEVTR VAREVGTEGR
LGGQADVKGV SGTWKDLTES VNFMANNLTD QVRSIAEVTT AVAKGDLSQK ITVDARGEIL
QLKSTINTMV DQLSAFADEV TRVAREVGTE GMLGGQAQVP GVAGTWRDLT DSVNFMAGNL
TAQVRSIAQV ATAVAKGDLT RTIDVDARGE ILELKNTLNT MVDQLSSFAD EVTRVAREVG
TDGRLGGQAD VKGVSGTWKD LTESVNVMAD NLTAQVRSIA EVTTAVAKGD LSQKIRVDAR
GEILELKETI NTMVDQLSAF ADEVTRVARE VGTEGNLGGQ ATVRGVSGTW KDLTDNVNVM
ASNLTGQVRS IAQVASAVAK GDLSQKITVE AKGEVAALAE VINTMVDTLS AFASEVTRVA
REVGTEGTLG GQARVSNVAG TWKDLTDNVN FMANNLTNQV RNIAQVTTAV AQGDLTRKID
VDARGEILEL KTTINTMVDQ LSSFAAEVTR VAREVGSEGR LGGQAEVEGV SGTWKRLTEN
VNELAGNLTR QVRAIAGVTS AVAEGDLTRS ITVDASGEVA ELKDNINSMV KSLRETTRAN
HDQDWLKSNL ARISGLMQGR RDLAVVAELV MDELTPLVGA QYGAFFLAED AADGSGIELR
LISSYGDPGD DRPTRFRLGQ SLVGQAARSK RVIAIDDVPG DYVALGSGLG RTAAASLVVL
PIAVEDQVLG VIELASMHRF TPVHRAFLEQ LMETVGVNVN TIVANARTDE LLGESQRLAA
ELQARSGELQ VRQEQLQTSN AELEEKAALL ASQNRDIETK NLEIEQARQE LETRAQQLSL
ASKYKSEFLA NMSHELRTPL NSLLILAQLL AQNSNRNLTP KQVEYAGVIH SAGSDLLQLI
DDILDLSKVE AGKMNVDPER VSLQRLLDYV EATFHPLTTQ KGLEFSVRTA SGMPGQMLTD
DSRLRQVLRN LLSNAVKFTE TGGVELSIEP AAPEELPLGV RDSGPALAFR VKDTGIGIPE
QQLETIFGAF QQADGTTSRK YGGTGLGLSI SREIAQLLGG AITAQSALGE GSTFTLYLPI
EHPDWADPPA SDGGQFGDAA TGQVVAGELV KTISGAGGGA SAGSGSMASV GSMTSVGSIG
SIGSVGSNGS TGSIGSAGSI ASAGVAAGGA RRPGSERAVT GTSSRRLLVV EDRARGLLSL
VAESAAEDLL AGRERLGPQA RVQIRTAVGA QEAAAMLAAE PHHCVVLELD MAQDGAALFL
QARTADPALH SIPILAHHNR TLRSDQERLL RAHAELYPLE LLPSLDELRE RIVLHLGAEH
PDDVVPLPQP GRERPAELPD SGGLLAGRSV LVIDDDARNL FALTGMLEMH GMRVVDAEDG
VKGIQALQND PRIEVILMDV MMPEMDGYEA TARIRTMPEH ADLPIIAVTA KAMNGDREKS
LAAGANDYVT KPVDAAVLIE SIQRVLGL
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