Gene Caci_4104 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_4104 
Symbol 
ID8335458 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp4635081 
End bp4635596 
Gene Length516 bp 
Protein Length171 aa 
Translation table11 
GC content72% 
IMG OID644957207 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003114809 
Protein GI256393245 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02983] RNA polymerase sigma-70 factor, sigma-E family 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.495485 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.0202864 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCGCTT CGGAGGAGGC GGAGTTCGAC GAACTCGTCG CCGGGCGGGC GACCTCGCTG 
CGCCGCACCG CGTATCTGAT GTGCGGGGAC TGGCATCAGG CGGAGGACCT GGTGCAGGTC
ACCTTCATGA AGCTGCACGC CTCCTGGCAC CGGATCCGGC GGCAGGAGGC GTTCGACGCC
TACCTGCGCA AGACCCTTCT GCGGGCCCTG ATCGATGAGA AGCGGCGCGC GCGGTGGCGG
TGGGAGGCGC CGACGGACAT GCTGCCGGAG GTCGCCGATC CGGCGCCCCA GCCGGACGGA
GTGCGCGACC TGCTGGTCGC CGGGCTGAGG CGGCTGCCGC CCCGGCAGCG TGCGACGCTC
GTCCTGCGGT ACTTCGAGGA CCTGAGCGTG GAGGAGACCG CCCACGCGCT CGGCTGCTCC
CCGGGGACCG TGAAGAGCCA GACGTCCAAG GGCCTGGCCG CCCTGCGCGT CATCGTCGAC
CCGGTCCACC TCGCACGGAC GGAAGAACTC GCGTGA
 
Protein sequence
MRASEEAEFD ELVAGRATSL RRTAYLMCGD WHQAEDLVQV TFMKLHASWH RIRRQEAFDA 
YLRKTLLRAL IDEKRRARWR WEAPTDMLPE VADPAPQPDG VRDLLVAGLR RLPPRQRATL
VLRYFEDLSV EETAHALGCS PGTVKSQTSK GLAALRVIVD PVHLARTEEL A