Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_4104 |
Symbol | |
ID | 8335458 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 4635081 |
End bp | 4635596 |
Gene Length | 516 bp |
Protein Length | 171 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644957207 |
Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
Protein accession | YP_003114809 |
Protein GI | 256393245 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02983] RNA polymerase sigma-70 factor, sigma-E family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.495485 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.0202864 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCGCTT CGGAGGAGGC GGAGTTCGAC GAACTCGTCG CCGGGCGGGC GACCTCGCTG CGCCGCACCG CGTATCTGAT GTGCGGGGAC TGGCATCAGG CGGAGGACCT GGTGCAGGTC ACCTTCATGA AGCTGCACGC CTCCTGGCAC CGGATCCGGC GGCAGGAGGC GTTCGACGCC TACCTGCGCA AGACCCTTCT GCGGGCCCTG ATCGATGAGA AGCGGCGCGC GCGGTGGCGG TGGGAGGCGC CGACGGACAT GCTGCCGGAG GTCGCCGATC CGGCGCCCCA GCCGGACGGA GTGCGCGACC TGCTGGTCGC CGGGCTGAGG CGGCTGCCGC CCCGGCAGCG TGCGACGCTC GTCCTGCGGT ACTTCGAGGA CCTGAGCGTG GAGGAGACCG CCCACGCGCT CGGCTGCTCC CCGGGGACCG TGAAGAGCCA GACGTCCAAG GGCCTGGCCG CCCTGCGCGT CATCGTCGAC CCGGTCCACC TCGCACGGAC GGAAGAACTC GCGTGA
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Protein sequence | MRASEEAEFD ELVAGRATSL RRTAYLMCGD WHQAEDLVQV TFMKLHASWH RIRRQEAFDA YLRKTLLRAL IDEKRRARWR WEAPTDMLPE VADPAPQPDG VRDLLVAGLR RLPPRQRATL VLRYFEDLSV EETAHALGCS PGTVKSQTSK GLAALRVIVD PVHLARTEEL A
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