Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_4100 |
Symbol | |
ID | 8335454 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 4632136 |
End bp | 4633095 |
Gene Length | 960 bp |
Protein Length | 319 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644957203 |
Product | transcriptional regulator, LysR family |
Protein accession | YP_003114805 |
Protein GI | 256393241 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.554738 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.0246683 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATAGACG TCCGTCGGCT ACGGCTCCTG CGGGAGCTGT CGGTCCAGGG CACCGTGACC GCCGCCGCCG AAGCCCTGCA CCTGACGGGT CCCGCCGTCT CGCAGCAACT GGCCGCGCTG GAGAAGGAAG CCGGCGTCCC ACTCCTGGAG AAGCACGGCC GCACCCTGCG CCTGACGTAC GCCGGTCAGC GTCTGGTCGA GCACGCCGAC GTGATCCTCG GCAACCTCGC CGCCGCCGAC GCCGAACTCC AGGCACTGCG CGCCGGGCAG CGCGGGACGG TGTTGATCAC CGCGTTCCCC TCAGCGGCGC GAGTTCTGCT CCCGCCGCTG TGGCAGCTGC TGGCGCAGGA CAGCGAGGCT GAGGTTGGCG ACGTCGGCGC CATGCGACCA GAGCTGCGCA TCACCGAAGC CGAGCCGGAC GTCTCGGTGG AGATGCTGCG CCGCCGCGAA ACCGACATCG CGGTCGCACA CGCCTACAGC CTCCTGCCGC GTCCACTCCC ACCGGGCTGC GAACAGCATC GGCTGATGGA AGAACCGGTG TACCTGGCGC TGCATCCGGA CACCGCCGCG GCGCACGATC TGACGCCCCA CCAACCTGCC GAGCTCGCCG ATTTCCGTGA CGAGGGCTGG CTTCTGCCCG ATCCCCGCAC CTACTGCCAC GAACTCACCC GCCGCGCCTG CGGGGCGGCC GGCTTCGTCC CGTCGCCGAT CGCCGCGGCC ACCGACTTCT CGGTGCTCAC CGCGCTGGTC GCGGCGCGCG CCGGCGTCGC GCTCGTGCCC CGCATGGCGC TGCCCGCCGA CACCCGCGGC GTCAGCCTGC ATCCGCTGAC CGCGCCGGTC ACGCGGAGCG TGTACGCGCT GGCGCGCAGC GGGGAGGCGG GGCAGCCTCG GCTGAGCCGG GTGCTGGAGG GGTTGCAGAC GGTGGCACTG AATCAGTACA GCGTCACGGC GTTCGTCTGA
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Protein sequence | MIDVRRLRLL RELSVQGTVT AAAEALHLTG PAVSQQLAAL EKEAGVPLLE KHGRTLRLTY AGQRLVEHAD VILGNLAAAD AELQALRAGQ RGTVLITAFP SAARVLLPPL WQLLAQDSEA EVGDVGAMRP ELRITEAEPD VSVEMLRRRE TDIAVAHAYS LLPRPLPPGC EQHRLMEEPV YLALHPDTAA AHDLTPHQPA ELADFRDEGW LLPDPRTYCH ELTRRACGAA GFVPSPIAAA TDFSVLTALV AARAGVALVP RMALPADTRG VSLHPLTAPV TRSVYALARS GEAGQPRLSR VLEGLQTVAL NQYSVTAFV
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