Gene Caci_4100 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_4100 
Symbol 
ID8335454 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp4632136 
End bp4633095 
Gene Length960 bp 
Protein Length319 aa 
Translation table11 
GC content72% 
IMG OID644957203 
Producttranscriptional regulator, LysR family 
Protein accessionYP_003114805 
Protein GI256393241 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.554738 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.0246683 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATAGACG TCCGTCGGCT ACGGCTCCTG CGGGAGCTGT CGGTCCAGGG CACCGTGACC 
GCCGCCGCCG AAGCCCTGCA CCTGACGGGT CCCGCCGTCT CGCAGCAACT GGCCGCGCTG
GAGAAGGAAG CCGGCGTCCC ACTCCTGGAG AAGCACGGCC GCACCCTGCG CCTGACGTAC
GCCGGTCAGC GTCTGGTCGA GCACGCCGAC GTGATCCTCG GCAACCTCGC CGCCGCCGAC
GCCGAACTCC AGGCACTGCG CGCCGGGCAG CGCGGGACGG TGTTGATCAC CGCGTTCCCC
TCAGCGGCGC GAGTTCTGCT CCCGCCGCTG TGGCAGCTGC TGGCGCAGGA CAGCGAGGCT
GAGGTTGGCG ACGTCGGCGC CATGCGACCA GAGCTGCGCA TCACCGAAGC CGAGCCGGAC
GTCTCGGTGG AGATGCTGCG CCGCCGCGAA ACCGACATCG CGGTCGCACA CGCCTACAGC
CTCCTGCCGC GTCCACTCCC ACCGGGCTGC GAACAGCATC GGCTGATGGA AGAACCGGTG
TACCTGGCGC TGCATCCGGA CACCGCCGCG GCGCACGATC TGACGCCCCA CCAACCTGCC
GAGCTCGCCG ATTTCCGTGA CGAGGGCTGG CTTCTGCCCG ATCCCCGCAC CTACTGCCAC
GAACTCACCC GCCGCGCCTG CGGGGCGGCC GGCTTCGTCC CGTCGCCGAT CGCCGCGGCC
ACCGACTTCT CGGTGCTCAC CGCGCTGGTC GCGGCGCGCG CCGGCGTCGC GCTCGTGCCC
CGCATGGCGC TGCCCGCCGA CACCCGCGGC GTCAGCCTGC ATCCGCTGAC CGCGCCGGTC
ACGCGGAGCG TGTACGCGCT GGCGCGCAGC GGGGAGGCGG GGCAGCCTCG GCTGAGCCGG
GTGCTGGAGG GGTTGCAGAC GGTGGCACTG AATCAGTACA GCGTCACGGC GTTCGTCTGA
 
Protein sequence
MIDVRRLRLL RELSVQGTVT AAAEALHLTG PAVSQQLAAL EKEAGVPLLE KHGRTLRLTY 
AGQRLVEHAD VILGNLAAAD AELQALRAGQ RGTVLITAFP SAARVLLPPL WQLLAQDSEA
EVGDVGAMRP ELRITEAEPD VSVEMLRRRE TDIAVAHAYS LLPRPLPPGC EQHRLMEEPV
YLALHPDTAA AHDLTPHQPA ELADFRDEGW LLPDPRTYCH ELTRRACGAA GFVPSPIAAA
TDFSVLTALV AARAGVALVP RMALPADTRG VSLHPLTAPV TRSVYALARS GEAGQPRLSR
VLEGLQTVAL NQYSVTAFV