| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4080 |
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| Symbol | |
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| ID | 8335433 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | - |
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| Start bp | 4607848 |
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| End bp | 4609743 |
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| Gene Length | 1896 bp |
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| Protein Length | 631 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644957183 |
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| Product | type IV secretory pathway VirB4 protein-like protein |
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| Protein accession | YP_003114786 |
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| Protein GI | 256393222 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.020005 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.0495521 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCTCA CCAGCCGCGC TCGAATACGG CGCGAGAAGG AAGGCGCAAG CGCGCCGGTC
CGTGCCCTGG ACGCGATGCC AGCGCCGGAG TCGGTGCAGG TCGCCCCGCG CTATCTGCGC
ATCGGGGAGA TGTACGCCGC CAGCTTCGCG GTCACCGGCT TCCCCTCCGA GGTCGGCCCC
GGCTGGCTCG AGCCGCTGCT GACCTACCCG GGACGGCTGG ACGTCTCGCT GCACATCGAG
CCGATCGAGA CCCAGGTCGC CGCCGAGCGG CTCCGTCGCC AGCGGGCGCG CTTTGAGTCC
GGCCGACGAT CGGACTTCGA GAAGGGACGC CTGGCCGACC CCTACGCCGA AGCCGCCGCC
GAGGACGCCA CCGAACTCGC GTATCGACTC GCCCGCGGCG AAGGTCGCCT GTTCCGTGTC
GGTCTGTACC TCACCGTGTA TGCCGGGTCC GAGAAGGCTC TCGCGGAGCA GACGTCCGCG
GTCAAGTCGC TTGCCTCGGG GCTGCTGCTG CAGATGCAGC CGACCTCGTT CCGGGCGCTG
GCTGGGTGGA CCAGCTGCCT GCCGCTGGGC GTGGACGCGA TCAAGCTGCG CCGCACCTTC
GACACCGCCA GCCTCGCCTC CGCGTTCCCG TTCACCAGCC CCGACCTGTC GCCGATCGAC
CCGACTGACA CCGCCGCCCC GGACGGCATC CTCTACGGCG TAAACGCCGC CTCGAGCGGG
CTGGTCATCT ACGACCGGTG GGCGCAGGAC AACTACAACT CGATCGTGCT GGCCCGCTCC
GGGGCCGGGA AGTCGTTCTT CTCCAAGCTG GAGATCCTGC GCAGCCTCTA CGGCGGGGTC
CAGGTCCTGA TCGTCGACCC GGAGAACGAG TACGAGCGCC TGGCCGCACT CGTCGGCGGC
GCGTACCTCG ACCTCGGCGC AGACGGGGTG CGGTTGAACC CGTTCGACCT TCCGGAGAAC
GCCGAGAAGT CGGCGGGCAA GTCCAACGCC CTGGTCCGCC GCGCGCTGTT CCTGCACACC
TTCATCACCG TCCTCGTCGG GGAGCCGCTC ACCCCGGCCG AGCGCGCCGC GCTGGACCGG
GCGGTCCTGG CCGCATACGC CGCCGTCGGC ATCACCGCCG ACCCGCGCAC CTGGAAGCGG
CAGGCGCCGA TCCTGTCGGA TCTGGCCGAG GCGCTGCACG CGAACTCAGA CCCGGCAGCG
GTCTCGCTCG CGGCGAAGCT GGAGCCGTTC ACCACCGGCT CGTGGGCCGG GCTGTTCGAC
GGCCCGACGA CCACGGCTCC GTCGGGGCAT CTTCAGGTGT TCTGCCTGCG GCACCTGCCC
GAGGAGCTGA AGTCGGTCGG GACGCTGCTG GTCCTGGACA CGGTGTGGCG GCAGGTCACC
TCGCGCGAGC GCCGCCGGCG CTTGGTCGTG GTCGACGAGG CGTGGCTGCT GATGCGCGAG
CCGGAGGGCG CGAAGTTTCT GCTGCGCATG GCCAAGGCCG CGCGCAAGTG GTGGGCCGGT
CTCGCCGTGA TCACGCAGGA CACCGCCGAT GTGCTGTCCA CGGATCTGGG CCGGGCGGTC
GTCGCCAACG CCAGCACGCA GATCCTGCTC CGTCAGGCGC CGCAGGCGCT AGACGCGGTC
GCCGACGCCT TCCACCTGTC CGCAGGCGAG CGGGATTTCC TGGCCGCCGC CCCGGTCGGA
ACCGGACTCC TGGCTGCCGG CGAGCAGCGG GTCGCCTTCG CCGCTGTCGC CTCCGAAACC
GAGTACGCGG TCGCGACGAC CAATCCGGCC GACCTCGTCG GTGAGGACGA GCCGGACGGC
TACTTCGACC CCGACAGCGA AGACCCCGAC GCCGAGGAAT CAGACCTCGC ATTCACCACT
GCCGACCTCG ACGACCCTGA CGGGATGCTC CTTTGA
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| Protein sequence | MTLTSRARIR REKEGASAPV RALDAMPAPE SVQVAPRYLR IGEMYAASFA VTGFPSEVGP
GWLEPLLTYP GRLDVSLHIE PIETQVAAER LRRQRARFES GRRSDFEKGR LADPYAEAAA
EDATELAYRL ARGEGRLFRV GLYLTVYAGS EKALAEQTSA VKSLASGLLL QMQPTSFRAL
AGWTSCLPLG VDAIKLRRTF DTASLASAFP FTSPDLSPID PTDTAAPDGI LYGVNAASSG
LVIYDRWAQD NYNSIVLARS GAGKSFFSKL EILRSLYGGV QVLIVDPENE YERLAALVGG
AYLDLGADGV RLNPFDLPEN AEKSAGKSNA LVRRALFLHT FITVLVGEPL TPAERAALDR
AVLAAYAAVG ITADPRTWKR QAPILSDLAE ALHANSDPAA VSLAAKLEPF TTGSWAGLFD
GPTTTAPSGH LQVFCLRHLP EELKSVGTLL VLDTVWRQVT SRERRRRLVV VDEAWLLMRE
PEGAKFLLRM AKAARKWWAG LAVITQDTAD VLSTDLGRAV VANASTQILL RQAPQALDAV
ADAFHLSAGE RDFLAAAPVG TGLLAAGEQR VAFAAVASET EYAVATTNPA DLVGEDEPDG
YFDPDSEDPD AEESDLAFTT ADLDDPDGML L
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