Gene Caci_3998 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_3998 
Symbol 
ID8335351 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand- 
Start bp4529301 
End bp4529918 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content71% 
IMG OID644957111 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003114714 
Protein GI256393150 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0825494 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.0160725 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCGCGCA TCAGCCCCGA ACGCCGAGCG GCCAAGCGCG GCGACATCAT CGCCGCGGCT 
CGCCGCTGCT TCTCCCGCGA TGGGTTCCAC CAGACGTCGA TGCCTGAGAT CGCCGCGGAG 
GCCGGCCTGT CGGCGGGAGC GCCCTACCGC TACTTCGCGA GCAAGGAGGA GATCATCCTC 
GCCATCGCCA GCGACGCGTT CCGGCTGGTC TTCGAGCCGG TCCAGCGCCT GGCCGAAGCC 
ACGGACGCGC CGACCGTCGC CGATCTGGTC GCCGCGGCGC TGAGGACCAT CGAACAGGAC 
ACAGTGACGG ACGCGGCGGG CCGCATGGTG CCGGTTGAGG AGCTACTGCG CTGCGCTGTC 
CAGACATGGT CGGAAATCCT TCGCAGCGAA GAGGTCCGCG ACGGCGCCGT AAAGGGTTTC 
GAAGGCGTGC ACCGCAGCAT CGCCGAGGCG CTACGGCGCG GCCAGGCCGT CGGCTCGATG 
CCCGCGACCG TGGACGCGGA TCTGGCCGCG CGCACTGTGA TGGGCCTGCT GCACGGGATG 
CTGCTCCAGC GTGTCGCCTT CGGCGCGGCC GACGCCGCCG GCCTCGCCGA CGGTGTCCAG 
GCCGTTTTGC GGCAGTGA
 
Protein sequence
MPRISPERRA AKRGDIIAAA RRCFSRDGFH QTSMPEIAAE AGLSAGAPYR YFASKEEIIL 
AIASDAFRLV FEPVQRLAEA TDAPTVADLV AAALRTIEQD TVTDAAGRMV PVEELLRCAV 
QTWSEILRSE EVRDGAVKGF EGVHRSIAEA LRRGQAVGSM PATVDADLAA RTVMGLLHGM 
LLQRVAFGAA DAAGLADGVQ AVLRQ