Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_3985 |
Symbol | |
ID | 8335338 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 4518526 |
End bp | 4519131 |
Gene Length | 606 bp |
Protein Length | 201 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644957099 |
Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
Protein accession | YP_003114702 |
Protein GI | 256393138 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.00934681 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.27393 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCTGCCG CCCTGAACGG CTGCTGCGGC AATCCGATTC CGAACCGGTT CCGAACCTTC CCCGTGGGCG GAACACAGGA GAGTCCTGAT CCGGGCAGCG GTCTCGGGTC CGGCGAGCGC TTCGAGGGCC AGGTGCGGGA GTTGGCTCGT CCGATGGGCG AGCAGGCATA TCGCATTCTC GGCGACCGGT CGCTGGCCGA GGAGGTCGTG CAGGAGGCGT TGCTGCAGAT GTGGCTGCAT CGCGACGGCT TCGACTCGGC CCGCGGCTCG CTCGGGGGAT GGGCGCTGGC CATCGTCCGC CATGTGGCGG TCGACCGCGT ACGCAGTGAG CAGGCCGCGG CACGGCGCGA GGCGTTGTTC GCCGTCCGCC ACGCGGCCAC CCCGTACGAC GAAGTCGTGG ACGCGGTCGA GCGCGTCCAG GACTACGCGC GGATCCGCAC GCTGTTGGAC GACCTCACCG CGGTGCAACG TGAGGCGATC CGCCTGGTCT ATTTCGACAA CCTGAGTGCC GCTCAAGCCG CCGAGCGCCT CGGAATCCCC GTGCCGACGC TGCGAACCCG TCTCCGTGAC GCACGCCAGG CGCTGGAGTT GATACTCGGC TCCTGA
|
Protein sequence | MAAALNGCCG NPIPNRFRTF PVGGTQESPD PGSGLGSGER FEGQVRELAR PMGEQAYRIL GDRSLAEEVV QEALLQMWLH RDGFDSARGS LGGWALAIVR HVAVDRVRSE QAAARREALF AVRHAATPYD EVVDAVERVQ DYARIRTLLD DLTAVQREAI RLVYFDNLSA AQAAERLGIP VPTLRTRLRD ARQALELILG S
|
| |