| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3909 |
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| Symbol | |
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| ID | 8335262 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | - |
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| Start bp | 4432703 |
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| End bp | 4437325 |
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| Gene Length | 4623 bp |
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| Protein Length | 1540 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644957035 |
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| Product | CRISPR-associated protein, Cse1 family |
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| Protein accession | YP_003114638 |
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| Protein GI | 256393074 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1203] Predicted helicases |
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| TIGRFAM ID | [TIGR01587] CRISPR-associated helicase Cas3
[TIGR02547] CRISPR system CASCADE complex protein CasA/Cse1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0587749 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.0865606 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTTCAATG TCGGCAGCAC GAGATGTTGG GGGGATGGTG GGTTGCGTAA CGCCGCAGAG
GACCTGTCCG CAGCAACGCG ATCGGCATGG GCAAAGTCCG ACCCGGATTC AGGGCAAAGT
CTGTCCCTGA TTCGGCATCT TGCGGACTCT GCGGCGATCG CTGAACACCT GTGGGACCAA
TGGCTTCCTG ACCATGTTAA GAGCCTTATT GCTGAGGGCC TTCCGGAAGG GCTGGTCGAT
GGCAGGACTC TGGCGGTATG GCTCGCAGGA ACCCACGACA TAGGGAAGCT AACGCCGGCA
TTTGCCTGCC AGTGCGAACC GCTCGCACAG GCAATGCGTG AATGTGGCCT TGATATGCCG
ACACGCACGC AGTTCGGCGA CGACCGACGG GTGGCGCCGC ATGGGCTCGC GGGCCAGGTA
CTGCTGCGTG AGTGGCTCAT GGAGCGGCAT GGTTGGTCCG GACGATCCGC CGATGCGTTT
ACGGTCATTG CGGGTGGACA CCACGGGGTG CCCCCGAGCT ATTCGCAGCT TCATGATCTT
GATGCGTATC CGGAACTTCT TCGCACGCCT GGGGCAAGCG AGGGCATATG GAAGTCATCG
CAGCATGAGC TGCTTGATGC GTGTGCTGTG ATGACCGGAG CGTCGAGTCG TCTGGCGCAC
TGGCGCGGTT TGAGGCTTTC GCAGCAGGCT CAGGTACTGC TGACTGGTCT GGTCATCGTT
GCTGACTGGA TCGCTAGCAA CACCGATCTG TTCCCTTATC CGGCTCTGGG AACGGGCGAG
GCGGCGATCG ATCCTGGTAA GCGCGTTGAG TTGGCCTGGC GGGGCCTGGA GTTGCCAGCA
CCGTGGGCGC CCAAATATCT GATGCCTGGC ATGCAGGGTT TGCTTGCTAG CCGGTTCGGG
CTGCCGGCGG ACGCGCAGCT GCGTCCGGTC CAGCAGATGG CTGTGCAGTT GGCGTCTGCT
AATGCCGCGC CAGGCCTGTT GGTCATCGAG GCGCCGATGG GGGAAGGGAA GACCGAAGCT
GCGCTTCTTG CTGCGGAAAT CTTGGCGGCC CGGAGTGGCG CGGGTGGGGT ATTTCTGGCG
CTGCCGACAC AGGCCACCAG CAATGCGATG TTTGCACGGG TGGTGAACTG GCTTCGCCAG
GTGCCGCGCG AAGGCGTTGC CTCCGTTCAT TTGGCACATG GAAAGGCGGC GTTGGATGAC
GCCTTCGCCT CGTTTCTGCG GGCTGCACCG AGGCTGACCT CTATTGACGC GGACGGGTAC
GCCGGTGAGG CCAATGTTCG CCGCGACAGG CGAGCAGGCT CGGCGGATAT GGTGGCTCAT
CAGTGGCTTC GTGGCCGCAA GAAGGGGATC TTGTCGCCGT TCGTTGTCGG CACGATCGAC
CAGTTGCTGT TCACGGGCTT GAAGTCGCGG CATCTCGCGC TGCGACATCT GGCGGTGGCG
GGCAAGGTCG TCGTCATCGA CGAGGTGCAC GCCTACGACG CCTACATGAG CGTGTATCTG
GAGCGGGTGC TGTCCTGGCT CGGCGCCTAC CGGGTCCCGG TGGTGTTGTT GTCAGCGACG
TTGCCGGCCG ACCGTCGGCA GGCTCTCGTC GAGGCCTACG GCGGCATCAC GTCGGAGGCG
CTGCGGGATG CCCGTGAAGC GTACCCGGTC CTGACAGCTG TGACGATAGG TGCGCCGGCT
CAGGCGGTCG GTACCGAGCC GGCCGAGGGT CGCCGCGTCG ACGTGAATGT GGAGGCGTTC
GACGACGACT TGGGCCGACT TGCCGATCGT TTGGAGGCTG AGCTGGTCGA CGGGGGTTGC
GCGCTGATCA TCCGCAACAC TGTCGGCCGG GTCTTGCAGA CGGCTCAGCA GCTGCGGGAA
CGCTTCGGCG CCGGGCAGGT GACCGTGGCG CACTCGCGGT TCATTGACCT GGACCGGGCG
CGTAAAGATG CCGATCTACT GGCTCGGTTC GGCCACGACG GTGCACGGCC ACGACGACAC
ATCGTTGTGG CCAGCCAGGT CGCGGAACAA TCACTTGACA TTGACTTTGA TTTGCTGGTC
ACCGATCTCG CACCCATCGA CCTCGTTCTC CAGAGGATGG GACGGGTGCA CCGACATCAT
CGCGGCGGTC CGGAGCAATC GGAGCGTCCG CCCAGCCTAC GCACGGCTCG ATGTCTGGTG
ACCGGGGTGG ATTGGGCGGG TATTCCGTCG GCACCGATAG CAGGTTCGGT GGCGGTCTAC
GGGCTGCACC CGTTGCTGCG TAGCCTGGCT GTCCTGCAGC CGTACCTGAC AGGAAGCGCG
CTGACGTTGC CGGGTGACAT CAATCCCCTG GTTCAGTGCG CGTATGCGCA GAGTTTTGTC
GCACCGACGG GTTGGGGCGA GGCTATGGAC GCCGCGCAAG CCGAGCACAT GGCGCACATA
GTGCAGCAGC GCGAGGGGGC CATGGCATTC TGCCTCGACG AGGTCCGCGG GCCGGGGCGA
TCTCTCATCG GGTGGATCGA CGGCGGCGTT GGCGATGCGG ACGATACCCG GGCTGGTCGG
GCGCAGGTTC GCGACAGCCC GGAGACGATC GAGGTGCTAG TCGTCCAACG AGGCAGCGAT
GGTGTCCTGC GGACGCTGCC GTGGCTGGAT CGGGGCCGTG GAGGGCTCGA GCTGCCGACG
GAAGCTGTGC CGCCGCCGCG CGCAGCCCGA GCGGCGGCCG CCAGCGCGCT GCGTCTGCCC
GGGTTGTTCG CCAAACCGTG GATGTTCGAT CGGGTGCTTC GGGAACTTGA GCGCGAGTAT
CACGAGGCCT GGCAGGCGAA GGAGAGCTCG TGGCTGCAAG GCGAGTTGCT TCTTGTGCTT
GATGAGGAGT GCCGGACCGT CTTGGCCGGC TACGAGTTGT CCTACAACCC GGATGACGGT
TTGGAGATGG TGATGCCTGG TGAACCGCAT GCCGCTGTAG TACGGGACAA GGAGGCCTCG
GATGACAAGA CGGCTTCGTT CGATCTGACC TCAGCGCCGT GGCTCCCGGT GTTGTACGCC
GACGGTATGC AGGGTGTGCT GTCGCTGCGA GATGTGTTCG CCCAGTCGAA CTTGATCCGC
AGGTTGGTCG GGGATCTTCC GACCCAGGAC TTTGCGCTGC TACGTCTGCT ACTGGCCGTC
CTATATGACG CGGTAGACGG GCCGCGCGAC GGTCAGGACT GGGAGGACCT GTGGACCTCG
GATGACCCGT TCGCAGCGGT GCCAGCCTAT CTGGACAGCC ACAGGGAGCG GTTCGATCTG
CTGCACCCTG CCACGCCTTT CTATCAAGTT CCCGGGCTGC AGACAGCGAA AGGTGAAGTA
GGGCCGCTCA ACAAGATCGT GGCCGACGTG CCGGACGGTG ATCCGTTCCT CACCATGCGC
ATGCCCGGTG TCGAACAGCT CAGTTTCGCT GAGGCCGCCA GATGGCTGGT TCACACACAA
GCGTTCGACA CCTCGGGGAT CAAGTCGGGT GTCGTCGGCG ATCCCAAAGC GGTGAACGGC
AAGCGGTATC CGCAAGGTGT CGCCTGGCTA GGCAACCTCG GCGGGGTATT CGCCGAAGGC
GACACGCTGC GCCAGACCCT GCTGCTCAAC CTCATCCCTG CAGACACCAC GAATCTGCAG
GTCACCTCCG CCCAAGATGT ACCCGCGTGG CGAGGTACAA ACGGCAGGGC CGGGAGCGAC
CATGCTGACG CTGAACCCCG TGTTCCTGCT GGGCTACGCG ACTTGTATAC CTGGCAGTCG
CGGCGTATCC GGCTGGAGTA TGACACCCGC GGCGTCACTG GGGCTGTGCT GACCTACGGC
GACGAACTCA CTGCGCACAA CAAGCATGGC GTGGAACCGA TGACAGGCTG GCGGCGAAGC
AAGCCCCAGG AGAAGAAACT CGGCCTATCC ACGGTCTACA TGCCGCAGCA GCATGATCCC
ACGCGTGCCG CCTGGCGGGG GATCGAGTCT CTGTTGGCTG GGAGCGCAGG TAGCGGAAGC
AGCCAGACTG GGGAACCGGC CTCCCACTAC CGCCCCAAGA TCGTGGATTG GCTCGGCGAG
CTGGCCCACC ACGGCAACCT GCCAAGCCGC GGACTGATAC GAGTACGTAC ATCAGGCGCC
GTGTACGGAA CACAACAGTC GATCATCGAC GAAGTGGTCA GCGATGAACT GACTATGGCC
GTCGTGCTTC TCCACGAAGA CGACCCCCGC TTCGGTAAAG CCGCCGTCAC AGCAGTCAAG
GACGCGGACT CCGCAGTTGC CGCTCTAGGC GACCTGGCCA GCGACCTTGC CCGGGCCGCG
GGACTCGACC CGGAACCAGA ACGCGTCACC GCGCGGGACC GAGCGTTCGG GGCCCTTGAC
GGCCCGTACC GCCGTTGGCT GCTGGACCTG GGCAACAGCA CTGACCCGGC CGCTATGCGC
GCCGTGTGGC AGGGGCGGGT CTACGACATC ATCGCAGTGC AGGGCCAGAT GCTCTTGGAC
TCAGCTGGCT CGGCAGCCGC ACAGGGCCGG ATGGTGAAGA CCACCCGCGG GGAGCGCTGG
ATGGACGATT CCTTGGCTGA CTTGTACTTC AAAGGCCGCA TCGCCAAGGC GCTCAGTAGC
CGTCTCGGTA AGAAGCCAAC CGATCCCGGC GAACCCGTAG GCATACAGGA GGACCCGGCA
TGA
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| Protein sequence | MFNVGSTRCW GDGGLRNAAE DLSAATRSAW AKSDPDSGQS LSLIRHLADS AAIAEHLWDQ
WLPDHVKSLI AEGLPEGLVD GRTLAVWLAG THDIGKLTPA FACQCEPLAQ AMRECGLDMP
TRTQFGDDRR VAPHGLAGQV LLREWLMERH GWSGRSADAF TVIAGGHHGV PPSYSQLHDL
DAYPELLRTP GASEGIWKSS QHELLDACAV MTGASSRLAH WRGLRLSQQA QVLLTGLVIV
ADWIASNTDL FPYPALGTGE AAIDPGKRVE LAWRGLELPA PWAPKYLMPG MQGLLASRFG
LPADAQLRPV QQMAVQLASA NAAPGLLVIE APMGEGKTEA ALLAAEILAA RSGAGGVFLA
LPTQATSNAM FARVVNWLRQ VPREGVASVH LAHGKAALDD AFASFLRAAP RLTSIDADGY
AGEANVRRDR RAGSADMVAH QWLRGRKKGI LSPFVVGTID QLLFTGLKSR HLALRHLAVA
GKVVVIDEVH AYDAYMSVYL ERVLSWLGAY RVPVVLLSAT LPADRRQALV EAYGGITSEA
LRDAREAYPV LTAVTIGAPA QAVGTEPAEG RRVDVNVEAF DDDLGRLADR LEAELVDGGC
ALIIRNTVGR VLQTAQQLRE RFGAGQVTVA HSRFIDLDRA RKDADLLARF GHDGARPRRH
IVVASQVAEQ SLDIDFDLLV TDLAPIDLVL QRMGRVHRHH RGGPEQSERP PSLRTARCLV
TGVDWAGIPS APIAGSVAVY GLHPLLRSLA VLQPYLTGSA LTLPGDINPL VQCAYAQSFV
APTGWGEAMD AAQAEHMAHI VQQREGAMAF CLDEVRGPGR SLIGWIDGGV GDADDTRAGR
AQVRDSPETI EVLVVQRGSD GVLRTLPWLD RGRGGLELPT EAVPPPRAAR AAAASALRLP
GLFAKPWMFD RVLRELEREY HEAWQAKESS WLQGELLLVL DEECRTVLAG YELSYNPDDG
LEMVMPGEPH AAVVRDKEAS DDKTASFDLT SAPWLPVLYA DGMQGVLSLR DVFAQSNLIR
RLVGDLPTQD FALLRLLLAV LYDAVDGPRD GQDWEDLWTS DDPFAAVPAY LDSHRERFDL
LHPATPFYQV PGLQTAKGEV GPLNKIVADV PDGDPFLTMR MPGVEQLSFA EAARWLVHTQ
AFDTSGIKSG VVGDPKAVNG KRYPQGVAWL GNLGGVFAEG DTLRQTLLLN LIPADTTNLQ
VTSAQDVPAW RGTNGRAGSD HADAEPRVPA GLRDLYTWQS RRIRLEYDTR GVTGAVLTYG
DELTAHNKHG VEPMTGWRRS KPQEKKLGLS TVYMPQQHDP TRAAWRGIES LLAGSAGSGS
SQTGEPASHY RPKIVDWLGE LAHHGNLPSR GLIRVRTSGA VYGTQQSIID EVVSDELTMA
VVLLHEDDPR FGKAAVTAVK DADSAVAALG DLASDLARAA GLDPEPERVT ARDRAFGALD
GPYRRWLLDL GNSTDPAAMR AVWQGRVYDI IAVQGQMLLD SAGSAAAQGR MVKTTRGERW
MDDSLADLYF KGRIAKALSS RLGKKPTDPG EPVGIQEDPA
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