Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_3908 |
Symbol | |
ID | 8335261 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 4432035 |
End bp | 4432706 |
Gene Length | 672 bp |
Protein Length | 223 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644957034 |
Product | CRISPR-associated protein, Cse2 family |
Protein accession | YP_003114637 |
Protein GI | 256393073 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR02548] CRISPR system CASCADE complex protein CasB/Cse2 |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0000211783 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.232688 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCACTA CCAGCGCCAC GACAGTCAAC GCTCCAGCCC CGGCGGGCCC GCCACCGATT CACGAGCTCG TGAAGGAGAT CGCCAACGCC CATATCCGCA AGTTGCAGGG CGGCTACTTG AACGACCGTC CAGAGGCCGT GGCCGCTCTA GCGCGGATTC GGCGCGGTGT GGGCAAGCCA CTCCACGCCG TCCCGGACCT GTGGGGGTTG GAAGGCACGG ATCGGCTTTA CACGGATATC CCCGATCGCA GGGAAAACGA GCGGCTGCGC GCTGAGAACG CCGTGCACAT CGCAGTAACG CTCTGGGCGG TGCATCAGCA GTCACGCCGC GATTCGCCGA TGCATGTCGC GGGTGGGCCA CAGCTGGGAC GAGCTGTCCG TGCTCTGATG CCCGGCGATG ACATCGACGA GCCGTTGCGG CGCCGCTTCG TCCGAATCGG CACGGCCACC TCCCTGGACA CACTCGCGCA GCGTCTGCGC GATGTCGTCC TTGTTCTGCG ACAGCACACG CAAGCGATGG ACTACGCCGC GCTCGCCGAA CAGATCTATC ACTGGCAAAT GCCTGATCGG CGAGCCAGAG TCCGCAGGGA TTGGGGACGG AACTTCCACG CCCGAGCACA ACAGGGCACG CCAGACACTC AAGGAACCGA GCAGACAAAG GAAGCCTCAT GA
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Protein sequence | MTTTSATTVN APAPAGPPPI HELVKEIANA HIRKLQGGYL NDRPEAVAAL ARIRRGVGKP LHAVPDLWGL EGTDRLYTDI PDRRENERLR AENAVHIAVT LWAVHQQSRR DSPMHVAGGP QLGRAVRALM PGDDIDEPLR RRFVRIGTAT SLDTLAQRLR DVVLVLRQHT QAMDYAALAE QIYHWQMPDR RARVRRDWGR NFHARAQQGT PDTQGTEQTK EAS
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