Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_3895 |
Symbol | |
ID | 8335248 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 4418958 |
End bp | 4419572 |
Gene Length | 615 bp |
Protein Length | 204 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644957021 |
Product | transcriptional regulator, TetR family |
Protein accession | YP_003114624 |
Protein GI | 256393060 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.467976 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.029552 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCACCG AGCCGATGGG GCTGCGCGAA CGCAAGAAGC ATGAGGCACG GCTCCGCATC GCGGACGCGG CGCTGGAGCT GTTCGCGGCC AAGGGGTTCG ACCATACGAC GGTCGCGGAG GTCGCCGCCG CCGCGGACGT GTCGGTCAAG ACCGTGTTCA ACTACTTCCC TGCCAAGGAA GATCTCTTCT TCGACCGCGC CGAGGAGGTG GAGCAGCGCT GGCTGGACGC CGTCGCCGAC CGGTCGCCCG GCGAGTCCGT CCTCGCCGGT CTGCGTCGCA GGTCCCTGAG TCGCTTCGAT CAGAACGCGG ACGGCTCGGC GTTCCGTTTC CGCCGAGTGA TGGCCGGTAG CGCGGTCCTG CAAGGCCGCG GCCAGCAGAT GTGGGCCGCC CACGAGGACG CCATCGCCGC GGCTTTGGCC GAGGCGATGG GTGCCGCCGT AGACGATCCG ACGCCCCAGG TCTTGGCGAG CCAGGCCCTC GGCACCCATC CGCTGGCCTT GCGCATGGCC GAGCGGTGGA GCGACGCCGG GCTCGCGGCC GAGGAGGTCC AGCGTCGGGT ACTGGACCTG ATCAACCGGT GGTACGACGT GCTGGAGGAG GGGATCGGCC GCTAG
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Protein sequence | MTTEPMGLRE RKKHEARLRI ADAALELFAA KGFDHTTVAE VAAAADVSVK TVFNYFPAKE DLFFDRAEEV EQRWLDAVAD RSPGESVLAG LRRRSLSRFD QNADGSAFRF RRVMAGSAVL QGRGQQMWAA HEDAIAAALA EAMGAAVDDP TPQVLASQAL GTHPLALRMA ERWSDAGLAA EEVQRRVLDL INRWYDVLEE GIGR
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