| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3834 |
|---|
| Symbol | |
|---|
| ID | 8335187 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 4341613 |
|---|
| End bp | 4342812 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644956971 |
|---|
| Product | protein of unknown function DUF58 |
|---|
| Protein accession | YP_003114574 |
|---|
| Protein GI | 256393010 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1721] Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00386989 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0608669 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCCGAT CGGGTGTGGC CGTCGCCTTC GCCGCCGCAC TGCTCGGAGT GCTCGGGGCG
GTGAGCCGGT ACCGGGAACT GCTGCTCCTG GCCATCGGCT GCGCGACAAC ACTGGCGATC
GCGATCGCTT GGGCTGCCTC GAAGAGAACC AACCTGGTCG CGACCAGTGA GTACGCACCC
GCACGGCCCG AGGACGGGCA GCTGGTCGAG GCAACCGTGC ACGTACGGAA CCACGGGCGG
CGTACCAGCC GGCCGATGGT CGCCGTGGAG CAGGTGGGCG CCGACGCCTA CGGACTGGAA
ATCCCGGAAC TGGCTGCCGC ACAGAAACAC GACGGGACCT ACACGTTCGT CGCACCGCGA
CGCGGACAGC TGACGGTCAG CCGCGCGCCG GCAGCGAACA CCGATCCGAT CGGCTTGGTC
CGCAGAACCG AACTGGACGG TCAGGACACG CAGATCCGTG TGTATCCGCG CTGGCACAGC
GGAATCGCGC CGATCCTGGG CCCGGACGCG CGCGTCGGCC GCGGCACGGT CGGGGTACCC
CGCGGCGAGT ACGACTTCCA CTCGCTGCGC GACTACGAGC CCGGTGATCC GCTACGGCTC
ATCCACTGGC GCGCCACGGC GAAGCGCGGG GAGCCGCTGG TGCGGCGCCT GGAGGTGCCG
GACGAGGCCG AACAGCTGAT CGTGCTGGAC AACAGCGCAC TCTCGTTGAA CGCAGAGGAT
TTCGAGCACG CGGTGCGGGT CGCCGCCTCG CTGGCGGTCG CCGCGCGGCG AGCGGGCCTG
GCCTTGGAAC TGCGCACCGT GTGCGGGCCC GCGGTCGCGC GGCTGCGGCG CACGGGCCGG
TCCGCCAGCG CCACCGCCGC GATGGAGCTC CTGTGCGACG TCGAGCAGAT GCCGTTGAAA
CAGGGCCCTG ATCTGGCTGC CGTGCTGGCC GGCTTGGGAC GCGGCCGGGC AGACGTCGCG
CGACGCGGCG CGGCGTTCCG ATCGGAGAAC GCCGGCCCGG TCGTACTCGG CGTGGTGACC
GGCTTTCTCA GTACCCGTAC AGCGACGGCA CTGAGCCGGG CCCGGCAGAG GTTTGAGGCC
GCCTATGTCG TCCAGGTCGG CGAAAAGGTA CCTGTGACCC GTGTCAAGGA TGTCGAATGC
GTTCGCATCA AGACCAGTGA GGACCTTGTG GGGCAATGGA AGCGCCTGGT ACGCGGCTGA
|
|---|
| Protein sequence | MTRSGVAVAF AAALLGVLGA VSRYRELLLL AIGCATTLAI AIAWAASKRT NLVATSEYAP
ARPEDGQLVE ATVHVRNHGR RTSRPMVAVE QVGADAYGLE IPELAAAQKH DGTYTFVAPR
RGQLTVSRAP AANTDPIGLV RRTELDGQDT QIRVYPRWHS GIAPILGPDA RVGRGTVGVP
RGEYDFHSLR DYEPGDPLRL IHWRATAKRG EPLVRRLEVP DEAEQLIVLD NSALSLNAED
FEHAVRVAAS LAVAARRAGL ALELRTVCGP AVARLRRTGR SASATAAMEL LCDVEQMPLK
QGPDLAAVLA GLGRGRADVA RRGAAFRSEN AGPVVLGVVT GFLSTRTATA LSRARQRFEA
AYVVQVGEKV PVTRVKDVEC VRIKTSEDLV GQWKRLVRG
|
|---|
| |