Gene Caci_3813 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_3813 
Symbol 
ID8335166 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand- 
Start bp4313882 
End bp4314550 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content68% 
IMG OID644956952 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003114555 
Protein GI256392991 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0327168 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.449726 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCGTACA CTTCCATCAA TGTGTACGAC ACCGTTTCGA TGGGGAGCGT CGTGGCGATG 
ACTGAGAGCC GGGCGCACAG ACGCGAGGAA GCAATCCTGC TGGCGGCGAT GGGGCTGCTC 
GGCGACGTCG GCTACGACCG GATGTCGATC GACGGGGTCG CCGAACGCGC GCACGCCAGC 
AAGGCGACGA TCTACCGGCG CTGGCCGGGT AAGGCGGAGT TGGTTGCCGA GGCTGTACGA 
CGTTATGCGC GCTCTGCGAT CGCCCTCCCG CCGGAGGGCG CGAGTCTGCG CGAAGACCTG 
CTAGCCGTGC TGGGCTCGCT GCGCGCCAAC CTCGCAGAGC AGGACGCTGC GTTGGTCCTC 
GGGCTGCTCC TGGCCATGCG GCATGACGCC GAGCTGGCCC GGACGGTACG GCAGAACGTC 
CTGGACTACA AGCGTGAGGT GTTCGCGGCG GTACTGGCGC GCGCCGCCGC CCGCGGCGAC 
ATCCCCGAGA CCGCGGATTG CCAACTGGCG GCCGAGATCA GCTCGGCCGT GCTGGTCAAC 
CGGCTGCTCG TCACGGACGA GCCGCTGGAC GACGCGTTTC TCGCACGATT CGTCGACACG 
GTACTGCTCC CCACACTCCA AGCCCGACCC GCACAACCCA ACCGGCCCGC CGGACCCCTT 
AGCCAATAA
 
Protein sequence
MSYTSINVYD TVSMGSVVAM TESRAHRREE AILLAAMGLL GDVGYDRMSI DGVAERAHAS 
KATIYRRWPG KAELVAEAVR RYARSAIALP PEGASLREDL LAVLGSLRAN LAEQDAALVL 
GLLLAMRHDA ELARTVRQNV LDYKREVFAA VLARAAARGD IPETADCQLA AEISSAVLVN 
RLLVTDEPLD DAFLARFVDT VLLPTLQARP AQPNRPAGPL SQ