Gene Caci_3740 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_3740 
Symbol 
ID8335093 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp4217458 
End bp4219953 
Gene Length2496 bp 
Protein Length831 aa 
Translation table11 
GC content69% 
IMG OID644956880 
Productalpha-L-rhamnosidase 
Protein accessionYP_003114483 
Protein GI256392919 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3408] Glycogen debranching enzyme 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00224496 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTGCGTC GCGTCAGAGT CCTGCGTAAC CCCCGCCTCC GCGCCACCGC CCTCGCCTGC 
GCGGGACTGC TCGCCGCCCT CGGCGCGGTA CCGGCAGCAT CGGCGGCACC GGCCGCGTCC
GCCGCCTCAT CCCCCACCCC CTGGCCGTCC ACCCCCGCCT GGCAGTCCTA CGACGAGACC
CCGACCAGCG CGACCGTCTG CCCCACCGCC GTCACCAGTA CCTCCGGTAC CGTCTCCGGC
GCATCCGGGC TGCTGTGCGG CGGCTCCGGA GCAGCGCAGC TCACCCTGGC CTCCGGCGGA
ACCGCACCGA CGATCGTCTT GGACTACGGC AAGGACGTCG GCGGCGTCCC CTTCTTCCAC
GTCACCTCCG AGACCGGCTC GCCGACGCTG CGCGCCGGCT ACTCCGAAGG GCGTGACTCC
ATCAGCTCGA CCGGCGACGG CGCCTCCCCC TGGGCCGAGG GCGACAGCAA CCGCTACGAC
GACTACCCCG TCACCGCCCC TGGGACGATC ACCAACCAGT ACGTCCAAGG TGGCGAGCGC
TACGAGGAGC TCACCCTCAC CACACCGGGC TCGATCACCT TGAGCGGCGC CGGAATCACC
TACATCGCCG ACCGCACCCA GGCCGCCGAC CTCGCAGGCT GGTTCAACTC CAGCAACGCC
GCGCTGAACC AGATCTGGTA CGACTCCGAA TACACCGACC AACTCGACTC GGTCCCCGCC
AAGTCCCTGC CCGGCGCGTG GTCGGTGAGC GGCGGCGTCC TGCGAGCCGG GGGCGATCCC
AGCGGGATAC CGGGCCTGCT GACCGCGGGC TCGTCCTGGG GCGACTACAC CGTCGGCTTC
CAGACCGACG TCGTGACCAA CCAGTCCGGA TGGTTCGTGC GCGGCAAGGA CGTCGGCGAC
GGCTACCTGT TCATCCTCGA CGACAGCACC GACACCGCAG GTGCCGCCAA CACCCTTCAG
GAGTTCGACG AGCACGGCGG CACCTACACC TCCCTGGGCA CCGTCGCCCT GCCCAGCCCG
CTGACCGCCG GCACCTGGCA CACCGTCGCC ACAACGGTCT CCGGCTCCAC GCTCACCGTC
TCCCTCGACG GAAAGCTCCT CAGTACCCTG ACGAACACAG CTCACGCCAC CGGCTCGGTC
GGCTTCCGCG AATTCGCAGG CGAGGCGGCA GACTTCAAAA ACCTCACCGT CACCAGCTCC
TCCGGCGCCA CACTCTTCAG CGATCCTTTG AACTCCTCCG CAGCGCTGGC GAAGTTCGCC
GTCCCCGGGA CCAATCAGTA CGCGTCGATC CTCGACGGCG CCAAGCGCGA CCGAGCGATC
TGGTCCGGGG ACATGAACGT GGAGATCCCG AGCGTCTTCT ACTCCACCGG CAACGCGGCC
TACCTCAAGG GCTCGCTGCA ATTGCTCGCC AGCTACGCAC GCACCGACGG CGCGACAGCA
GGCGACATCC CGCCGCAGTA CCCGCTCGGC ACGTCGCCGC AGACCGGCTC CGGCTGGTTC
TACTCGGCGG ACTACTCGAC CTACTTCGTC CTGGGCCTCG CGGACTACTA CCTGTATTCC
GGCGACACCG CGTTCGTCCA GCAAGAACTT CCGGCTCTCA AAGCCGAGCT CGCCTGGAAC
GCCGGCCTGC TCGACGGCAA CGGCCTGGTC GCCACCGGCA GCGGGAACAA CGCCGACTGG
GACTTCTACG ACTCCGGTAA GAACGGCGAG GTCACCGCCT ACAACCTGCT CTACTACAAG
TCGCTGCTGG ACGGCGCGAC GCTGGCCGGC GCAGCCAGGG ACACCACCGA CGCCGCCGCC
TATACCAACC GCGCCGCCGC GCTGAAGACG GCGATCAACG CCCACCTCTA CAACAGCGGC
AGTGGCCTGT ATTACCTCAG CAACAACGAC ACCACCACCG TCGCGCAGGA CGCCAATGTC
CTCGCCGTCC TCTACGGCGT CGCCCCCGCC TCGGACGTCT CGACGGTTCT GTCCGCTCTG
AAGACCGATC TGTGGACCAC CCCCTACGGT CCCAAGCCGT TCACCGGCAG CACGTACGCG
GACGTCATCA GCCCTTTCAT CAGCGGCTAC GAGCTCGAGG CCAGCTTCGC CGCCAACGAC
ACGGCTGACG CCGAGGCGCT GCTCACCACG GTGTGGGGGC ACATGGCCGC CTCGGGTCCG
GAGCAGACGG GGACCACCTG GGAGAACGTG TCCGGCAACG ACGGGCTGCC CGGGCTCGGC
AGCCGCACCA ACTTGTCGCA CGGCTGGTCG ACGGCTCCGG TCTCCGCGCT GTCCGGGTAC
GTCCTGGGTG TGCAGCCCGC GAGCGCCGGT TTCGCCACCT GGAGCGTGAA GCCGCATCCC
GGGGACCTCG CTTACGCGCA GGGCAGCGTT CCGACGCCGC ACGGTGCGAT CGGCGTCGAT
TGGGCTGGGG AGAACGGGGT TCGCCAGTTC AGCATGGAGG TGACCGCGCC GCCGGGATCA
CCGGCGCCTC GGCGGACGCC AGCTACGTCT ACCTGA
 
Protein sequence
MLRRVRVLRN PRLRATALAC AGLLAALGAV PAASAAPAAS AASSPTPWPS TPAWQSYDET 
PTSATVCPTA VTSTSGTVSG ASGLLCGGSG AAQLTLASGG TAPTIVLDYG KDVGGVPFFH
VTSETGSPTL RAGYSEGRDS ISSTGDGASP WAEGDSNRYD DYPVTAPGTI TNQYVQGGER
YEELTLTTPG SITLSGAGIT YIADRTQAAD LAGWFNSSNA ALNQIWYDSE YTDQLDSVPA
KSLPGAWSVS GGVLRAGGDP SGIPGLLTAG SSWGDYTVGF QTDVVTNQSG WFVRGKDVGD
GYLFILDDST DTAGAANTLQ EFDEHGGTYT SLGTVALPSP LTAGTWHTVA TTVSGSTLTV
SLDGKLLSTL TNTAHATGSV GFREFAGEAA DFKNLTVTSS SGATLFSDPL NSSAALAKFA
VPGTNQYASI LDGAKRDRAI WSGDMNVEIP SVFYSTGNAA YLKGSLQLLA SYARTDGATA
GDIPPQYPLG TSPQTGSGWF YSADYSTYFV LGLADYYLYS GDTAFVQQEL PALKAELAWN
AGLLDGNGLV ATGSGNNADW DFYDSGKNGE VTAYNLLYYK SLLDGATLAG AARDTTDAAA
YTNRAAALKT AINAHLYNSG SGLYYLSNND TTTVAQDANV LAVLYGVAPA SDVSTVLSAL
KTDLWTTPYG PKPFTGSTYA DVISPFISGY ELEASFAAND TADAEALLTT VWGHMAASGP
EQTGTTWENV SGNDGLPGLG SRTNLSHGWS TAPVSALSGY VLGVQPASAG FATWSVKPHP
GDLAYAQGSV PTPHGAIGVD WAGENGVRQF SMEVTAPPGS PAPRRTPATS T