| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3725 |
|---|
| Symbol | |
|---|
| ID | 8335078 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 4194462 |
|---|
| End bp | 4196111 |
|---|
| Gene Length | 1650 bp |
|---|
| Protein Length | 549 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644956865 |
|---|
| Product | amino acid permease-associated region |
|---|
| Protein accession | YP_003114468 |
|---|
| Protein GI | 256392904 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0531] Amino acid transporters |
|---|
| TIGRFAM ID | [TIGR03428] permease, urea carboxylase system |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.747367 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.414333 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCAGC AGCTGAACGT GCCCCCTCCC GCACAGCGCA CCGACGCCAC CGGCACCACC
CACGCCGACG CCACCGGCGC CACCCACACC GACCGCACCG GTCCCGCCAC TGATTCCACC
GCCGAGGAGG TGGGCGCCCT GGCCGTCCTG GGCTACCGCC AGGAGCTGCG CCGGGGTGTC
GGGACCTTCT CGTCTTTCGC CGCCGGTTTC TCCTTCGTCT CGATACTGAC GACCGTCTTC
CAGTTGTTCG GGCTCGGCTT CGGGTTCGGG GGCGCGGCGT TCTTCTGGAC CTGGCCGCTG
GTCTTCGCCG GGCAGATGCT CGTCGCGCTG AACTTCGCGC AGCTGGCCGG GTGGTGGCCG
GTGTCCGGAG CCGTGTTCCA GTGGTCGAGC CGGCTGGCCG GGAAGTCCTT CGGCTGGCTC
ACCGGATGGA CGATGATCAT CGGGCAGATC CTCACCGTCG CCGTGGCCGC CGTCGCGGTG
CAGGCGGTGC TGCCGAGCAT CTGGGCCGGC TTCCAAATAG TCGGGGGCTC GCACGCCGAC
CCGACGCCCA CGTCCGGCAC CGGTGCTGAG AACGCCGTGG TGCTGGGCTG CGCGATGCTG
GCCGTCACGA CGGCGGTGAC GGTCCTACGC GTGCGCGTCA TGGCGATCGT CACCAGCGTC
GGGGTCGGTG TGGAGATCGT CGGGGTCACG GCGTTGGTGG CGCTGCTGTT CTTCCTGCCG
AAGCGGTCCG CGACCGTGGT GTTCCACCAC ACCGGCGCGA CCTTCTCCGG GTCCTACGCG
TTCGCCTGGC TCGCCTCGGC CCTCATGGCC GCCTACGTGC TGGTGGGCTT CGACGCCGCC
GGCGAGCTGT CCGAGGAGAC GCACGCGCCG CGCCGCACCA CGCCCCGCAC GATCGTGCGC
GCGGTGCTCG TCTCGGGCCT CGGCGGAGGT CTGCTGATTC TCGCCGGGCT GATCGCCGCG
CCGAGCCTGA CCGACGGCCA CCTCGCCTCG CAGGGCCTGG CCTGGGTGGT CGAGCAGCGG
TTCGGTGCGG TGGTGGGCCG GCTGCTGCTG TGCACGGTCG CCGTCGCGGT GTTCGCCTGC
ACGCTCGCCT GCCAGACCGC CGGGTCGCGC ATGGTGTACT CGATGGCGCG CGAAGAGGCG
CTGCCCGGCT CGAAAATCCT GGCGCGCGTG TCGCCCAGGA CCGGGACGCC GGTCGTGGCC
GGCCTGGTCG TCGGCCTCGG CGCCGTCGCC GCGCTGCTGG TCAACATCGG CCAGACCGCG
CTGTTCACGG CGTTGTCCAG CCTGTGCATC GCCATGCTCT ACCTCGCCTA CCTCGGCGTC
ACCGGACCGC TGCTGTACCG GCGTCTGTCC GGCTGGACCG CCGCGCGGTC CGGGGACCTG
GACGAGGACG GCCAGCCGGT CTTCACCCTC GGGCGGTGGG GCGTCGTGCT CAACGCGGTG
GCGGTCCTCT ATCAGGCCGC GATGGTCGTG AACCTGTTGT GGCCCAGGAC CGCGGTCTAC
GACACCACCG GGCACACCTG GTGGCTGCGC TGGTCCGCGG TCCTGTTCAT CGCCGCGACC
ACGGCGGTCG GAGCCTGCTA CTACGCCTTC ACCCACCGCG GGCACCGCGG GTTCGCCGAG
GTCCGGCTGG CCGCCGCCGA AGCAGCCTGA
|
|---|
| Protein sequence | MKQQLNVPPP AQRTDATGTT HADATGATHT DRTGPATDST AEEVGALAVL GYRQELRRGV
GTFSSFAAGF SFVSILTTVF QLFGLGFGFG GAAFFWTWPL VFAGQMLVAL NFAQLAGWWP
VSGAVFQWSS RLAGKSFGWL TGWTMIIGQI LTVAVAAVAV QAVLPSIWAG FQIVGGSHAD
PTPTSGTGAE NAVVLGCAML AVTTAVTVLR VRVMAIVTSV GVGVEIVGVT ALVALLFFLP
KRSATVVFHH TGATFSGSYA FAWLASALMA AYVLVGFDAA GELSEETHAP RRTTPRTIVR
AVLVSGLGGG LLILAGLIAA PSLTDGHLAS QGLAWVVEQR FGAVVGRLLL CTVAVAVFAC
TLACQTAGSR MVYSMAREEA LPGSKILARV SPRTGTPVVA GLVVGLGAVA ALLVNIGQTA
LFTALSSLCI AMLYLAYLGV TGPLLYRRLS GWTAARSGDL DEDGQPVFTL GRWGVVLNAV
AVLYQAAMVV NLLWPRTAVY DTTGHTWWLR WSAVLFIAAT TAVGACYYAF THRGHRGFAE
VRLAAAEAA
|
|---|
| |