Gene Caci_3629 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_3629 
Symbol 
ID8334982 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp4059422 
End bp4060888 
Gene Length1467 bp 
Protein Length488 aa 
Translation table11 
GC content66% 
IMG OID644956770 
Productglycoside hydrolase family 28 
Protein accessionYP_003114373 
Protein GI256392809 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG5434] Endopolygalacturonase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGAAGAA TCACCCTCCC CCCGATCCGC CGCTCGGCTC CCCGCATCAG CGTCCTCGCC 
GCCGCCGCAC TGGCGATCAG TGGCCTGATG ACGGGCGGTG CGCACGCGGC CAGCGTGGCC
ACCGGCGACA GCCGCTCCGT TCACGAGCCG TCACTTCCCT CCGTCTGCCA ACAGCTGAGC
GCGAACCTGG CGACCAGCAA CGAGCAGTTC TCCAGCAGCG CCGAAGCCAG CCCGCCGGAC
ACCTCCCGGA TCCAGAGCGC GCTCAACGCT TGCAAGAGCA GCGGAAAGTC GGTCGAGCTG
AAAAGCAGCG GCGGGAACAC CGCGTTCCTG TCCGCCCCGC TGACCGTGCC CACCGGCGTG
TACCTGGTGA TCGACTCCGG CACGACGCTG TACGCGAGCC GCGTCGCATC GCAGTACCAG
TCCAGTTCCT CGGACAAGTG CGGCACGATC TCCAGCAGCG ACAACGGCTG CAACCCGTTC
ATCAAGGTCT CCGGCGCCAA TGCGGGCATC GAGGGCGTCC GCAGCAGCTC CGGCTCCCAA
GGCACGATTG ACGGACGCGG CGGCCAGACC GTCTACGGCA CCAGCACGAC GTGGTGGCAG
CTGGGCACCA CCGCCGGCAA CGAGGGCAAG AAGCAGAACG ACCCGCGGCT GATCATCTTC
CAGGGCGCCG ACAACGCGAC CCTGTACAAC ATCAACCTGG TCAACTCAGC GTTCTTCCAC
GTGACCTACA AGTCCGGCAA CGGCTTCACC GCCTGGGGCG TCCGCATCAA GACCCCGGCC
ACCGCCCGCA ACACCGACGG CATCGACCCC GACGCCGCCA CCAACATCAC CGTCGCCAAC
TCCTATATCC AGGACGGCGA CGACGGCATC GCCATCAAGG GCGGCAGCGG CGCCGCGTCG
AACATCACCA TCGAGAACAA CCACTTCTAC GGCACGCACG GCATCTCCAT CGGCAGCGAG
ACCAACGACG GCGTGACCAA CGTGCTGGTC CAGAACAACA CCGTGCAGGG CTCCGACAGC
TCGGGCAATG TCAGCACCCT GAACAGCGGC CTGCGGATCA AGAGCTACCC GGGCAAGGGC
GGGACCGTCT CGACGGTCAC CTACACCAAC ACCTGCGAGA CCGGCGTGTC CCACCTGATC
GAACTGAACC CCCGCTACTC CTCATCGAGC GGTTCGGGCA CGCCGGAGTT CACCAACATC
CTGGTGAACG GACTCAAGTC GGTCAGCTCG GTGTCCGGCG CGCAGTCGAT CATCGAGGGC
TACGACTCCT CGCACATCAC CGGCCTGACC CTGCAGTACG TGAGCCTGGA CAAGACCGCC
TACACCGCCG CGTACGCGAA TGTCGGCGTC TACAACTCCA ACCTGAACCC GTCTTCGGGT
TCCGGCGTCC ACCTCACGCA GCTGTCCTCG CCCGTGACGA GCGGCAGCGT CCCCTCCTGC
TCCTTCCCCG GCTACCCGAG CCTGTAG
 
Protein sequence
MRRITLPPIR RSAPRISVLA AAALAISGLM TGGAHAASVA TGDSRSVHEP SLPSVCQQLS 
ANLATSNEQF SSSAEASPPD TSRIQSALNA CKSSGKSVEL KSSGGNTAFL SAPLTVPTGV
YLVIDSGTTL YASRVASQYQ SSSSDKCGTI SSSDNGCNPF IKVSGANAGI EGVRSSSGSQ
GTIDGRGGQT VYGTSTTWWQ LGTTAGNEGK KQNDPRLIIF QGADNATLYN INLVNSAFFH
VTYKSGNGFT AWGVRIKTPA TARNTDGIDP DAATNITVAN SYIQDGDDGI AIKGGSGAAS
NITIENNHFY GTHGISIGSE TNDGVTNVLV QNNTVQGSDS SGNVSTLNSG LRIKSYPGKG
GTVSTVTYTN TCETGVSHLI ELNPRYSSSS GSGTPEFTNI LVNGLKSVSS VSGAQSIIEG
YDSSHITGLT LQYVSLDKTA YTAAYANVGV YNSNLNPSSG SGVHLTQLSS PVTSGSVPSC
SFPGYPSL