| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3591 |
|---|
| Symbol | |
|---|
| ID | 8334944 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 4006511 |
|---|
| End bp | 4008067 |
|---|
| Gene Length | 1557 bp |
|---|
| Protein Length | 518 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644956734 |
|---|
| Product | esterase, PHB depolymerase family |
|---|
| Protein accession | YP_003114337 |
|---|
| Protein GI | 256392773 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3509] Poly(3-hydroxybutyrate) depolymerase |
|---|
| TIGRFAM ID | [TIGR01840] esterase, PHB depolymerase family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.229813 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCGAT CCCGTTCTGT GAAAACCCGC CTGCTCGGTC TGTTCGCGGC AGTGGCGGCT
GCTGTCGCTG TGAGTTTGCC TGCCGCGCCG CAGGCTGCTG CCGCGTCGTT GACGCAGGTG
ACGAACTTCG GGACCAACCC GAGCAACCTG GCGATGTATG TGTATGTGCC GAACAACGTC
AAGCCCAACC CGTCGATCCT GTTGGCGATG CACGGCTGTC AGGGCACTGC GTCGTACATG
TACTCCAGTA CTGATTTCGG GAAGCTGGCC GATCAGTACG GGTTCATCGT CATCTACCCG
CAGACCAACC CCAGCGGCAG TTGCTGGGAT GTGTCCTCCG ATCAGGCGCT GAAACGCAAC
GGCGGCAGCG ATCCGGTGGG TCTGATGTCG ATGATCACCT ACACCGAGCA GCACTACGGC
GGGAATGCCA ACTCGGTGTT CGTCACCGGG GAGTCCTCCG GCGGGATGAT GACCAACGTC
ATGCTCGCCG ACTACCCGGA TGTGTTCAAG GCTGGTGCGG CGTTCATGGG CGTGCCCTAC
CACTGCTTCT ACACCGGCAG CGTGCGCGGC TGGAACTCGC CCTGCGCCAA CGGCCAGGTC
TCCATGACCG CCCAGCAGTG GGGCGACCTC GTGCGCAATG ACGGGGATCC CGGTTACACC
GGTCCGCGTC CGCGGATGCA GTTGTGGCAT GGCACTGCCG ACACCACGTT GAACTACAAC
AATCTGGGTG AGGAGATCAA GCAGTGGACG AACGTGGACG GGGTGAGTCA GACCCCGTCG
TCCAGTGACA CCCCGGTCGC CAACTGGAAC CGCACCCGCT ACAACAACGC CTCCGGCACC
ACCCAGGTCG AGGCGTACAG CATCGTCGGC GCCGGACACC AGCTGCCGAT CCAGGGCACA
CAGATGGCCG CCTACGCCAT CCACTTCATG GGCCTGGACG GCAGCGGCAC CACCACCGGC
AACACGGTCA CCGTGACCAG CCCCGGCAAC CAGAGCGCCA CCGTCGGCAC CGCGATCAGC
GCCGTGCAGG TCCACGCCAC CGACTCGGCC ACCGGACAGT CCCTGACCTA CAGCGCGACC
GGTCTTCCGG CGGGGCTGTC GATCTCCTCC AGCGGGCTGA TCTCCGGCAC TCCGACCGCA
GCCGGCACCT CCACCTCGAC GGTGACCGCG ACCGACGGGA CCGGCGCGTC CGGCTCGGCG
ACGTTCACCT GGACCGTCTC CGGCGGCGGC GGTACCACGC CGGGCACCTG CCATGTCGCC
TACACCAGGA CCAACGAATG GCCAGGAGGC TTCACCGCCA ACGTCACGAT CACCAACACC
GGTACGGCGG CGATCAACGG CTGGACCGTC GGCTGGAGCT TCCCCGGCGA CCAGAAGATC
ACCAACGCCT GGAGCGCCAC CGCCACCCAG AGCGGCGCCG CCGTCAGTGC CGCCAACGTC
GCCTACGACG CCACCATCGC CCCCGGAGCC AACACCTCGT TCGGCTTCCA GGGCACGTTC
ACCGCGAACG ACACCTCACC CTCGAGCTTC ACCGTCAACG GAGCCGCGTG CTCATAG
|
|---|
| Protein sequence | MLRSRSVKTR LLGLFAAVAA AVAVSLPAAP QAAAASLTQV TNFGTNPSNL AMYVYVPNNV
KPNPSILLAM HGCQGTASYM YSSTDFGKLA DQYGFIVIYP QTNPSGSCWD VSSDQALKRN
GGSDPVGLMS MITYTEQHYG GNANSVFVTG ESSGGMMTNV MLADYPDVFK AGAAFMGVPY
HCFYTGSVRG WNSPCANGQV SMTAQQWGDL VRNDGDPGYT GPRPRMQLWH GTADTTLNYN
NLGEEIKQWT NVDGVSQTPS SSDTPVANWN RTRYNNASGT TQVEAYSIVG AGHQLPIQGT
QMAAYAIHFM GLDGSGTTTG NTVTVTSPGN QSATVGTAIS AVQVHATDSA TGQSLTYSAT
GLPAGLSISS SGLISGTPTA AGTSTSTVTA TDGTGASGSA TFTWTVSGGG GTTPGTCHVA
YTRTNEWPGG FTANVTITNT GTAAINGWTV GWSFPGDQKI TNAWSATATQ SGAAVSAANV
AYDATIAPGA NTSFGFQGTF TANDTSPSSF TVNGAACS
|
|---|
| |