| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3468 |
|---|
| Symbol | |
|---|
| ID | 8334821 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 3850590 |
|---|
| End bp | 3851837 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644956612 |
|---|
| Product | Serine-type D-Ala-D-Ala carboxypeptidase |
|---|
| Protein accession | YP_003114215 |
|---|
| Protein GI | 256392651 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.560934 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0158413 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAACC ACACATCATC CTTCAGGCGG TACCGCGCGG TCGTCGCTCC GCTGGCTGTG
GCAGCGGTGC TCAGTACGGC GGTTGCCGGC GGTGCGCAGG CTGCTTCGCG GCATCCCTCG
CCGTCGCCTG CTCGTACGCT CGGGGCGCTG GCCGATCAGG TGGTGGCGGC GGGGGCGCCG
GGCGTGCTGG TCCGCGTGGA CTCCGGTCGC GACGCCGCGC CGATCGAGGT GACCCGGCAG
GCGTCGTGGG CGCGGTCGGA TGGATCGCTC GACGCCGACG ACCCGGTGCG GATGGGCTCG
AATACCAAGA CCATGGTCGC CACACTCGTG CTGCAGCTGG TCGCCGAGCA CAAGCTGGCG
CTCGGCGACA GTGTGGAGAG TCGGCTGCCC GGCATGGTGC CGAACGGGTC GGCGATCACT
ATCAGGATGC TGCTGGACCA CACGAGCGGG CTGTACAACT ACTTGGACGA TCCGGCGGTG
CTGGCTTCCT TCATCGGGCA GAACCCGCAT GACTGGACGC CGGAGGAGCT GCTTGCTGTC
GGTGTCTCGC AGCCTGCGCT GTTCGCGCCG GGAAGTCAGT TCTCTTACAG CAATACCAAC
TACATCGCCT TGGGTCTGAT CCTGCAGAAG ACGACCGGAC ACAGCCTGGC TGACCTGATT
CAGCAGCGGA TCGTGCGGCC GCTCGGTTTG CACAACACCT ACCTGGCCAC GCCGTCCAGC
CCGGTGACTA AGCTTGCCGA CGGATATGAG CCCGACGCTG CCGATATCGC TCCGTATCTG
CCTCCGGGCG TGCCGGCCGG GACTTCGTTC GTCGGTCCTG CGCGGGCTGA CTATGTGGAC
GTCACCGAGA TCAACCCCAG CAATCTGTGG GGTGCTGGAG GGATTGTCTC CACGGCGGAT
GACTGGGCTC GGTTTGACAG TGCTCTGATG TCCGGCAAGT TGCTGCCGGC GGCTGAGCTT
CGCGAGATGC GTGAGACGGT TCCGGAGGAC CCGGCGCAGC CTGATGGTGA CGGGTACGGT
CTTGGGCTGC GCAAGGTGGT GTTCCCGTGC GGCACGGTGT GGGGGCATGA CGGGCAGGCG
CCGGGCTACT CCAGCCAGAC GTATACGGAT ATCACTGGTA CGCGGACGGT CGAGATCGTC
GCGCCGACCA TCTTCGGTCT TGCCGCACCG AAGACTGCGG CGGCGTATCA GAGCCTGACG
AACGCGGCGG TGTGCGCGAT GCTCGGTCGG CCTATCCCAG CCTCCTGA
|
|---|
| Protein sequence | MSNHTSSFRR YRAVVAPLAV AAVLSTAVAG GAQAASRHPS PSPARTLGAL ADQVVAAGAP
GVLVRVDSGR DAAPIEVTRQ ASWARSDGSL DADDPVRMGS NTKTMVATLV LQLVAEHKLA
LGDSVESRLP GMVPNGSAIT IRMLLDHTSG LYNYLDDPAV LASFIGQNPH DWTPEELLAV
GVSQPALFAP GSQFSYSNTN YIALGLILQK TTGHSLADLI QQRIVRPLGL HNTYLATPSS
PVTKLADGYE PDAADIAPYL PPGVPAGTSF VGPARADYVD VTEINPSNLW GAGGIVSTAD
DWARFDSALM SGKLLPAAEL REMRETVPED PAQPDGDGYG LGLRKVVFPC GTVWGHDGQA
PGYSSQTYTD ITGTRTVEIV APTIFGLAAP KTAAAYQSLT NAAVCAMLGR PIPAS
|
|---|
| |