Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_3317 |
Symbol | |
ID | 8334670 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 3660266 |
End bp | 3661471 |
Gene Length | 1206 bp |
Protein Length | 401 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644956462 |
Product | Extracellular ligand-binding receptor |
Protein accession | YP_003114065 |
Protein GI | 256392501 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGTTCTCGT CACGAGTTCC GGCGCGCCTG CGCGCCGCTG TGGCCATCGG CGCGGTGACC GTGCTCGCGG CCGCCGGATG CAGCAGCAGC ACGTCCGGCA AGTCCGCCGC GAAGGGCGAC TCGCCCATCA CCATCGGTCT GATCACCGCC CTGACCGGCA GCAACAAGGC CCTGGGTCCG GACCACCTCA ACGGGTTCCA GCTCTACCTG GACAACCACG GCAACAAGCT CGGCGGCCAC ACCGTCAAGC TCGACGTGGG CGACGAGGCC AACGGCGGCG CCGCGGCGGT GCCGGTGGCC AAGAAGATGA TCGAGCAGGA CCACGTGCTG GCCATCGCCG GCATCGTGGC CACCCCGACC ATCCAGGCCG TGGTGCCGAT CGCGACCGCG GCCGGGGTCC CGGTGGTCAA CACCGGCGGC CGGCCGACCA TGAAGGACGT CTCGCACCTG TGGACCATGA GCTTCATGTC CACCGACCCC GGCGGCGCGA TGGGCCCGTA CATGGCCCAG AACGTCGGCG GCTCGGTCTA CGCGTTCGGT CCGGACTACC AGGGCGGCTA TGACCAGCTG CGCGGGTTCA CCGACTCCTT CGCCAAGGCC GGCGGCAAGC TCGCCAACGA CGGCGGCAAG CCGACGTTCA CGCCGTTCCC GGCCACCTCG GACTTCACGC CGTACCTGGC CAAGGTCAAG GCCTCCGGCG CCAAGGCGAT CTACTGCTTC TACACCGGCG CCAGCGCGAT CGCCTTCGTG AAGGACTGGT CCCAGTCCGA CGCCAAGGAC ATCCCGCTGT ACGCCGCCGG CTTCATCACC GAGGGCGGCG CGCTCAAGGC CGAGGGCACC GCGGCCAACG GCATCATCAC CTCGATGAAC TACTCGCCGG ACATCTCCAG CGCAGCGAAC CGCGCGTTCG TCTCGGCGTG GGGTCAGAAG TACAACGGCG AGGCGCCGCC GGCGACCGCG ATGTACAGCT GGGACGCCGC CTCCGTGCTG GACCAGGCGA TCGCCAAGGC CGGCTCGAAC CTGACGCCGG AGGCGATCAA CGCCGCGATC AAGGCGATGG GCCAGATCGA CAGCCCGCGC GGTACCTGGC AGCTGTCCTC CGACACCCAC GTCCCGGTCC AGAAGTGGTA CCTGCGCAAG GTGGAGATGG ACGGCACGGC GCTGGCCAAC GTCAAGGTCG GCGACCTGGC CACCATCGGC AGCTGA
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Protein sequence | MFSSRVPARL RAAVAIGAVT VLAAAGCSSS TSGKSAAKGD SPITIGLITA LTGSNKALGP DHLNGFQLYL DNHGNKLGGH TVKLDVGDEA NGGAAAVPVA KKMIEQDHVL AIAGIVATPT IQAVVPIATA AGVPVVNTGG RPTMKDVSHL WTMSFMSTDP GGAMGPYMAQ NVGGSVYAFG PDYQGGYDQL RGFTDSFAKA GGKLANDGGK PTFTPFPATS DFTPYLAKVK ASGAKAIYCF YTGASAIAFV KDWSQSDAKD IPLYAAGFIT EGGALKAEGT AANGIITSMN YSPDISSAAN RAFVSAWGQK YNGEAPPATA MYSWDAASVL DQAIAKAGSN LTPEAINAAI KAMGQIDSPR GTWQLSSDTH VPVQKWYLRK VEMDGTALAN VKVGDLATIG S
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