| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3271 |
|---|
| Symbol | |
|---|
| ID | 8334624 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 3609084 |
|---|
| End bp | 3610796 |
|---|
| Gene Length | 1713 bp |
|---|
| Protein Length | 570 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644956416 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_003114019 |
|---|
| Protein GI | 256392455 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.469409 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGTCG CCACGGCCGT GGAGCCGGCC GCCGCCGACA AGCGCTACCA GCGGGTCGCG
CTGACCAACA CCACCACGGC GATGTTCATG TCGGCGCTGG ACGGCTCGAT CGTGTTGATC
GCGCTGCCGC CGATCTTCCG AGGCATCCAC CTGGACCCGC TGGCGCCCGG GAACATCGCC
TACCTGCTGT GGATGATCAT GGGGTACCGC CTGGTGCAGG CGGTGTTCGT GGTCACGCTC
GGCCGCCTCG GCGACATGTT CGGCCGGGTG CGCACGTACA ACGCCGGGTT CATGGTCTTC
ACCATCGCCT CAGTGCTGCT GTCCTTCGAT CCCTTCGTCG GGACGCACGG CGCGATGTGG
CTCATCGGCT GGCGATTGCT ACAGGCCATC GGCGGCTCGA TGCTGACGGC CAACTCCGCG
GCCATCCTCA CCGACGCCTT CCCGCCCGAC CGGCGCGGGT TCGCCCTGGG CATCAACCAG
ATGGCGGCGC TGGCCGGGAT GTTCATCGGG CTGGTGGCCG GCGGGCTGCT TTCGGCGTGG
GACTGGCGCG CGGTGTTCTG GGTGAACGTG CCGGTCGGGA TCTTCGGGAC GTACTGGGCC
TATCGGCGGC TGCGCGAGAC CAGCCGCGCC ACCGGCGGGC GGATCGACTG GTGGGGCAAC
GTCACCTTCG CCGTCGGGCT CGGCTCGGTG CTGATCGGCG TCACGCAGGG CCTTCAGCCG
TATCAGGGGC ACGCCATGGG CTGGACGAAC CCGACGGTGA TCACGCTGCT GGGCGTGGGA
CTGGCCGGTC TGATCGCGTT CTACCTCATC GAGTCCCGGA TCGCCGAGCC GATGTTCGAC
CTGTCGCTGT TCAAGATCCA CGACTTCACG GTCGGCAACT CCGCCTCGCT GGCGATCTCG
GTGGCGCGCG GCGGGCTGCA GTTCGTCCTG GTCATCTGGT TGCAGGGCAT CTGGCTGCCG
CTGCACGGCT ACGACTACAG CGACACGCCG TTGTGGGCCG GCATCTTCCT GCTCCCGATG
ACCGTCGGCT TCCTGATATC CGGGCCGGTG TCGGGCTATC TGTCCGACCG CTTCGGCTCG
CGCGGGTTGT CGACAGCCGG CGCGGCGGTC TTCGGTTCCA GCTTCATCGG TTTGATTCTG
CTGCCTGTGC AGTTCCCTTA CTGGGCTTTC GCCTCGTTGA TCGCCATCAA CGGGATCGGC
AGCGGGATGT TCGGCGCACC GAACACGTCC TCCATCATGA GCAGCGTGCC GGCCAGCAAG
CGCGGCGCGG CTTCGGGGAT GCGCGCCACG TTCCAGAACT CCGGTACCGC GGTGTCGATC
GGCGTGTTCT TCTCGCTGAT GATCGCCGGG CTCGCCGCGA AGCTCCCGCA CACGCTCACC
ACCGGCTTGC AGCAGCAGGG GGTGTCGGCG CACGCCGCCG CGCAGATCGG GCAGCTGCCG
CCGGTGTCCT CGCTGTTCGC CGCGATGCTG GGCGTCAACC CGGTGCAGCA CCTGCTGTCC
GGGGTCGGCG CGCTGAACTC GCTGACCCCC TCGGCGCAGG CCACGCTCAC CGGGCGCGAG
TTCTTCCCGA ACCTGCTGTC AGGGCCCTTC CACCAAGGGC TGATCATCGT GTTCTCGGTC
GCCACCGGGC TCGCGGCGCT GGCGATGATC GCGTGCCTGC GGCGCGGCAA GGGACGCCCC
GTCAGGGAGG AAATCGCCGA CAGCGCCGGC TGA
|
|---|
| Protein sequence | MAVATAVEPA AADKRYQRVA LTNTTTAMFM SALDGSIVLI ALPPIFRGIH LDPLAPGNIA
YLLWMIMGYR LVQAVFVVTL GRLGDMFGRV RTYNAGFMVF TIASVLLSFD PFVGTHGAMW
LIGWRLLQAI GGSMLTANSA AILTDAFPPD RRGFALGINQ MAALAGMFIG LVAGGLLSAW
DWRAVFWVNV PVGIFGTYWA YRRLRETSRA TGGRIDWWGN VTFAVGLGSV LIGVTQGLQP
YQGHAMGWTN PTVITLLGVG LAGLIAFYLI ESRIAEPMFD LSLFKIHDFT VGNSASLAIS
VARGGLQFVL VIWLQGIWLP LHGYDYSDTP LWAGIFLLPM TVGFLISGPV SGYLSDRFGS
RGLSTAGAAV FGSSFIGLIL LPVQFPYWAF ASLIAINGIG SGMFGAPNTS SIMSSVPASK
RGAASGMRAT FQNSGTAVSI GVFFSLMIAG LAAKLPHTLT TGLQQQGVSA HAAAQIGQLP
PVSSLFAAML GVNPVQHLLS GVGALNSLTP SAQATLTGRE FFPNLLSGPF HQGLIIVFSV
ATGLAALAMI ACLRRGKGRP VREEIADSAG
|
|---|
| |