| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3202 |
|---|
| Symbol | |
|---|
| ID | 8334555 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 3529744 |
|---|
| End bp | 3531510 |
|---|
| Gene Length | 1767 bp |
|---|
| Protein Length | 588 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644956347 |
|---|
| Product | copper resistance protein CopC |
|---|
| Protein accession | YP_003113950 |
|---|
| Protein GI | 256392386 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2372] Uncharacterized protein, homolog of Cu resistance protein CopC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0543765 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0172994 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACTGA GGCTGGCACC GGCGTCGTGG ATGGGGCGAC GGTTTCTGAC GGTGTGCGCG
GCGGTCTTCG CCGCGGTGGT GGTGCTGGCG GGACCGGCTT CGGCGCATGC GGAGCTGGTG
TCGGCGACGC CATCGCAGGG TGCTGTCGTG CGCGGCGAGC CGACGCAGGT GACGCTGCGG
TTCTCGGAGG AGATCGTGCT GCGGCTGAGT GCCGTGAAGG TGATCGGCCC GGACGGCCGC
CGCCTGGACG CCGGGGCACT GCGCCCTGGC ACATCCGGCG CCGACAGCAT GGCGGTGAAC
CTCGCGCCCG ACGCACGGCA CGGCACGTTC GTGGTGGTAT GGCAGGTCAC GGCAGCCGAC
GACGGACACG CCAGCTCCGG CACCGTGATG TTCGCAGTCG GCGCGGCGAG CACCCCGGCC
AGCGTGGCAG GACTCGGACA CAACCGGCTC ACCAGCGCGG TCTACGACGC CGGCCAGTGG
ATCGGCTTCG CGGGACTGGC GATGGTCGGC GGAGTCGCGG CGCTGCACAC GTATCGGCGG
CGGGAGCAGG TGCCGGGCGG GGACGGCAGT AGCAGTAGCA GCATGCTGAT GGGTGCTGCG
GTCAGCATGG ACGCGGATGC TGGGGCTGGC GCCAGGTCGG AACACGCCGA GGCAGCAGGC
GGCCTGGTTG TCGGCGACTC AAACGCCGGG CTCCGGACAG AAGCCGGGAG CTCAGGCGCC
GAGATCAGGG CAGAAGCCGG CGGTGGGGAT CAAGCCGAGG CAGCTAGCGC GACCGGTGTT
CTCGCGAGCG ATCGAACCGA AGCAGCTGGC ACAACCGGTG TACTCGCAAG CAATCGAACC
GAACCAGCTG GCACAACCGG TGTTCTCGCG AGCGATCGAA CCGAACCAGC AGGCGCGACC
GGTGTACTCG CAGGCGATCA AGCCGAAGCA GCTGGCACAA CCGGTGTACT CGCAGGGGAT
CAAGCCGAGG CAGCTGGCAC TACCGCTGTT CTCGCGAGCG ATCGAGCCGA AGCATCAGCT
GCGCCCGCCT CGGTCCCGAC CTGGCCGGCG GCGCTCGGGT GGTCGCTGCT GGTTGTCGGG
ACGCTGATTC AGGTGGCTGC TTATGCGCCT GCTGCGCGGG GGTTGTCGGT TGGGCATTTG
CTGGATCGGT CTTTGTTGTC GGTCACGGTG GGGACGCGGG AGGGGCATGC TTTCATGGCG
CGGCTTTTGG TGCTGGCCGT GGGGGCTGTG GTGGGGGATG CGGTGTTGCG GCGGGCGCGG
GGGGCTTGGT TGCCGTTGGC TTTCACTGTT GCGGTGGCGG CTACGTGGGG GGCTACCGGG
CATGCGGCTA CCGGGGGTGG GGCGGGGGTG GCGATGGTTG CGGTGACGGT GCATGTCACG
GCGATGGCGG TGTGGGTTGG GGGGTTGTTC GTGGTGGCGG TGCTGTTGGC TGGTGGGGGT
CAGGTTGTGG GTGCGGCGGT GGGGCGGTTC TCGCGGTTGG CGCTCGGGGC GGTCGCGATG
CTGGTGGTGA CCGGGGTGTA TCAGGGGTGG CGGGAGGTGG GGAGTGTGAG CGGGCTGCTC
GATACGACCT ACGGCCGGCT CCTGCTCGCC AAGGTTGCGA TCCTGTTGTG CGTGATCGGG
GTCGCCAGGC GGTCGCGCGG GATGGTGGCG ACGTGGCGCG GCGGGGGCGA AGGCGCGTTG
CGGCGGAATG TGATGGTGGA GTTGGCGGGC GCGTCGGTGC TGCTTTTGTT GGCTGTGCTG
CTGGCGGGGA ACGCGCCCGC GCGCTGA
|
|---|
| Protein sequence | MSLRLAPASW MGRRFLTVCA AVFAAVVVLA GPASAHAELV SATPSQGAVV RGEPTQVTLR
FSEEIVLRLS AVKVIGPDGR RLDAGALRPG TSGADSMAVN LAPDARHGTF VVVWQVTAAD
DGHASSGTVM FAVGAASTPA SVAGLGHNRL TSAVYDAGQW IGFAGLAMVG GVAALHTYRR
REQVPGGDGS SSSSMLMGAA VSMDADAGAG ARSEHAEAAG GLVVGDSNAG LRTEAGSSGA
EIRAEAGGGD QAEAASATGV LASDRTEAAG TTGVLASNRT EPAGTTGVLA SDRTEPAGAT
GVLAGDQAEA AGTTGVLAGD QAEAAGTTAV LASDRAEASA APASVPTWPA ALGWSLLVVG
TLIQVAAYAP AARGLSVGHL LDRSLLSVTV GTREGHAFMA RLLVLAVGAV VGDAVLRRAR
GAWLPLAFTV AVAATWGATG HAATGGGAGV AMVAVTVHVT AMAVWVGGLF VVAVLLAGGG
QVVGAAVGRF SRLALGAVAM LVVTGVYQGW REVGSVSGLL DTTYGRLLLA KVAILLCVIG
VARRSRGMVA TWRGGGEGAL RRNVMVELAG ASVLLLLAVL LAGNAPAR
|
|---|
| |