Gene Caci_3160 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_3160 
Symbol 
ID8334513 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp3476181 
End bp3477380 
Gene Length1200 bp 
Protein Length399 aa 
Translation table11 
GC content70% 
IMG OID644956307 
Producttransposase IS116/IS110/IS902 family protein 
Protein accessionYP_003113910 
Protein GI256392346 
COG category[L] Replication, recombination and repair 
COG ID[COG3547] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.846497 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.201189 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTACGACA CCAGCGGCAT CGGCGTCTTC CTCGGTTTGG ACGTCGGCAA GGGCGAGCAC 
CACGGGCACG GGCTGACCCC GGCCGGAAAG AAGGTGTTCG ACAAGCAGTT GCCGAACAGC
GAGCCGAGGC TGCGGCAGGT GTTCGACAAG CTCAAGGCCA AGTTCGGTAC CGTGCTGGTG
ATCGTGGACC AGCCGGCGAA CATCGGGGCG CTGCCGCTGA CCGTGGCGCG GGACTGCGGC
TGCGAGGTCG CCTACCTGCC GGGTTTGGCG ATGCGCCGGT TGGCCGACAC CTACGAGGGC
GAGGCCAAGA CCGACGCCCG CGACGCGTTC GTCATCGCCG ACGTCGCCCG CACCAACCCG
CGCACCCTGC GGCAGATCAC CGTCACCGAC CAGACCGAGG CCGAGCTGGC CATGCTCGTC
GGGTTCGACG ACGACCTGGC TGGCGAATCC ACCCGCACCT CCAACCGGCT GCGCGGCCTG
CTCGCCCAGA TCCACCCGTC CCTGGAGCGC GTCCTCGGCA AGCGGATCCG CCACCCGGCC
GTCCTGGAAC TGCTGAGCCG CTACGGCTCC CCGCAGCAGC TGCACCAGGC CGGAGGCGAC
CAGATCGCGG CGGTCCTGAA GCCGAAGGCG CCGCGGATGG CCGCCCGCCT GGCCGCTGAG
ATCACCACCG CGCTGGCCGA GCAGACCGTC GTCGTGCCCG GCACCACCGC AGCCGAGGTC
ATCGTGCCCT CGCTGGCCCG GCAGCTGGCC GAGATCCTCA CCCAACGCGA CGCGCTGGAG
GGCCGGCTGG CAGCCCTGCT GGAGGCCCAC CCTCTTCACC GACTCCTGAC CTCCATGCCC
GGCGTCGGGG TCAGGATCGC CGCCACAGTG CTGATCACCA TCGGCGACGG CCGCACCTTC
CCCGACGCCG ACCACCTGGC CTCCTACGCC GGACTGTCCC CGGCCACCAA ATCCTCCGGC
TCCTCGATCA AAGGCGAACA CGCACCCAAG CGCGGAAACC GGCAGCTCAA ACGGGCCATG
TTCCTGTCCG CGTTCGCCGC CCTGCACGAC CCCGCCTCCC GCGACTATTA CGACCGGCAC
CGCAACAGCG GCAAAACCCA CACCCAGGCC CTGCTACGCC TGGCCCGCCG CCGGATTACC
GTCCTGTTCG CCATGCTCCG CGACGGCTGC CTCTACGAAT CCCGCCCGGC ATCAGCATGA
 
Protein sequence
MYDTSGIGVF LGLDVGKGEH HGHGLTPAGK KVFDKQLPNS EPRLRQVFDK LKAKFGTVLV 
IVDQPANIGA LPLTVARDCG CEVAYLPGLA MRRLADTYEG EAKTDARDAF VIADVARTNP
RTLRQITVTD QTEAELAMLV GFDDDLAGES TRTSNRLRGL LAQIHPSLER VLGKRIRHPA
VLELLSRYGS PQQLHQAGGD QIAAVLKPKA PRMAARLAAE ITTALAEQTV VVPGTTAAEV
IVPSLARQLA EILTQRDALE GRLAALLEAH PLHRLLTSMP GVGVRIAATV LITIGDGRTF
PDADHLASYA GLSPATKSSG SSIKGEHAPK RGNRQLKRAM FLSAFAALHD PASRDYYDRH
RNSGKTHTQA LLRLARRRIT VLFAMLRDGC LYESRPASA