Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_3139 |
Symbol | |
ID | 8334492 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 3446372 |
End bp | 3447886 |
Gene Length | 1515 bp |
Protein Length | 504 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644956286 |
Product | drug resistance transporter, EmrB/QacA subfamily |
Protein accession | YP_003113889 |
Protein GI | 256392325 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGGCGG CCCAACGCTG GGTCCTGACC CTCACTTCGC TGGCCGCCTT CATGATCGCC CTGGACGGCA CCATCGTCAC CACGGCGCTG ACCACTATCC GCAAGTCCCT GAACACCTCC GTCGAGGCGC TGGAGTGGAC CGTCAGCGCC TACATCCTCA CCTTCGCCGT GCTGATGCTC ACCGGCTCGG CCCTCGGCGA CCGCTTCGGC CGCCGCAAGG TCTTCGTCGG CGGTCTGACC CTGTTCACCG CCGCCTCGGC CGCCTGCGGC CTGTCCTCGA CCGTCGCCGA GCTGATCGCG GCGCGCGCCG TCCAGGGCGT CGGCGCCGCG GTCATCATGC CGCTGGCCAT AGCGCAGCTC GGCGCCGCGT TCCCGCCGCA GGAGCGCGGG CGCGCGATGG GCGTCTCGGC CGGCATCATC GGCCTGGCCA CCGCCGGCGG CCCGTTCGTC GGCGGCGTGG TGGCGCAAGG ACTCGCCTGG CAGTGGCTGT TCTGGGTCAA CGTCCCGGTC GGGGTGCTGG TCATCGCCGG CGTCCTGCTG AAGATGTCCG AGACGCACCA GCATCCGGGA CAGCCTCAAG GCCCGCGCGC ACGTCTGGAC CTGGTCGGCG TCCTGCTCAC CACCGGCGGC GTCCTGGGTC TGGTGTGGGC GCTGGTCCGG GGGAACGACG CGGGCTGGCT CTCGCCGGAG ACGCTCGGCG CGGCGGCGAT CGGCGTCGTG CTGACGGTCG CGTTCGTGTT CTGGGAACTG CGCGTCCCGG CGCCGATGGT CCCGATGCAC TTCTTCACGC ACCGAGCCTT CTCAGCGGGC AACGTCGCGA GCTTCACCAT GACCGGCGCG ATGTACGCCC AGCTGTACTT CCTGGCGCAG TACTACCAGA CCGTCCTGCA CTACGGCCCG TTCGGCGCGG GGGTCCGAAT GATGCCGTTC TCAGCGACGC TCCTGGTCTT CGGCCCACTT TCCGGACGAC TGGCGGACCG CCTGGGGGAG CGCCGCCTGG TCTCCACCGG TCTGGCGGTC CAGTCGCTCG GCCTGGTCGC CATCGCCCTA CTCGCCGACC ACCACGCCGC CTACCTGGCG ATGGTCCCCG CGCTGGTCCT CAGCGGCGCC GGGGTGTCCA CCGGCATCCC GCCGACGCAG AAGGCCGTGG TCAGCGCGGT GCAGCCGCAC CAGATCGGCC AGGCCTCAGG CGTGTTCAGC ATGCTGCGCC AGTTCGGCGC ACTGTTCGGG ACCGCCGTAT CGGTCGCGGT CTTCGCCGCC TCCGGCAGCT ACGCGAGCGT GCAGCGCTTC ACCGACGGAT TCACCGCCGC GATCTCGGTC GGCGCGGCGC TCGCGGCGGT CGGAGCCGTC GCCGCGCTGC TGCTGCCGCG GCTGCGCGGT ACGGGTCCTG CGGGTCCTGC TGGTCCTGCT GGTCCTGCGG GCTCTGCGGG TTCTGCGGGT TCTGCGACAA CAGGGTCCTC GGGGACCTCG GGATCCACCG AGCCGTCAGG GCGCGAGCCG ATCGCAGCCC GCTGA
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Protein sequence | MTAAQRWVLT LTSLAAFMIA LDGTIVTTAL TTIRKSLNTS VEALEWTVSA YILTFAVLML TGSALGDRFG RRKVFVGGLT LFTAASAACG LSSTVAELIA ARAVQGVGAA VIMPLAIAQL GAAFPPQERG RAMGVSAGII GLATAGGPFV GGVVAQGLAW QWLFWVNVPV GVLVIAGVLL KMSETHQHPG QPQGPRARLD LVGVLLTTGG VLGLVWALVR GNDAGWLSPE TLGAAAIGVV LTVAFVFWEL RVPAPMVPMH FFTHRAFSAG NVASFTMTGA MYAQLYFLAQ YYQTVLHYGP FGAGVRMMPF SATLLVFGPL SGRLADRLGE RRLVSTGLAV QSLGLVAIAL LADHHAAYLA MVPALVLSGA GVSTGIPPTQ KAVVSAVQPH QIGQASGVFS MLRQFGALFG TAVSVAVFAA SGSYASVQRF TDGFTAAISV GAALAAVGAV AALLLPRLRG TGPAGPAGPA GPAGSAGSAG SATTGSSGTS GSTEPSGREP IAAR
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