Gene Caci_3138 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_3138 
Symbol 
ID8334491 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp3445114 
End bp3446205 
Gene Length1092 bp 
Protein Length363 aa 
Translation table11 
GC content72% 
IMG OID644956285 
ProductRNA polymerase factor sigma-70 
Protein accessionYP_003113888 
Protein GI256392324 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02960] RNA polymerase sigma-70 factor, TIGR02960 family 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCATCG TGACGACCAT GACGACCATG ACGATGACGA CGACCACGAC ACCCGTGACA 
CCCGAGGCGG ACCCACCGAC GGCAGGGAGC GAGATGCGGG TCGAGGACGA CTTCGTCCGG
CTGGCCGACC CCTTCCGGCC GGAGATCCTG GCGCACTGCT ACCGGATGCT CGGCTCCATC
CACGACGCCG AGGACCTGGT CCAGGAGACC TACCTGCGCG CCTGGCGCTC CTACGAGGGC
TTCGAGGGAC GCGCGTCCCT GCGCACCTGG CTGTACCGCA TCGCCACCAA CGCCTGCCTG
ACCGCGCTGG AGCACCGCGC GCGGCGTCCC CTGCCGGCCG GCATCGGCAC CCCGCACACC
GACCCCGAGG GCGATCTGAG CGCGATCCCG CCGGAGATCA CATGGCTGCA GCCGTTCCCG
GACGTGCTGC TGGACACCGG GGTGTCCGCC GCGGCCGGCG CCGACCCGGC CTCGGTCGTC
GCGGCCCGCT CCGGCCTGCG CCTGGCGCTG GTCGCGGCCC TGCAGTACCT GCCGCCCCGC
CAGCGCGCGG TCCTGATCCT GCGTGACGTC CTGGGCTGGC GCTCCGCCGA GGTCGCCGCG
CTGCTGGACC TCACCGTGGC GGCGGTCAAC AGCCTGCTGA AGCGGGCCCG CGCCCGGCTC
GCGGAGGTCG CCCCGGACGT CGAGGACGTC GCCGAGCCCA CGCAGGCCGA GCAGCGCGAG
ATCCTGGACC GCTGGGCGAA GGCCTTCGTC GAAGCCGATG TCGACACCCT GATGAAGCTG
CTGACAGAGG ACGCGGTCTA CGAGATGCCG CCGCAGCCGA TGTGGTTCCG CGGCGCGCCG
TTCCTGCGGC GCCTGCTGAC CTTCCGCCTC GGCATGCACG GCAAATACCG CAAGATGATC
CCGATCCGCG CCAACGGCCA GCCCGCGTTC GCGGTGTACT CCGGCGACGA CGACCGCCTC
CTGGCCGCCG AGTCGGTACA GGTGCTGACG CTGCGCGGCG GGAAGGTCGC CCGGGTGACG
ACGTTCCGGA CGCCGGGACT GGTCGCGGTC GCGGGCTTCC CGATGGAGAC GGAGCTGGAG
AACGAGGACT GA
 
Protein sequence
MTIVTTMTTM TMTTTTTPVT PEADPPTAGS EMRVEDDFVR LADPFRPEIL AHCYRMLGSI 
HDAEDLVQET YLRAWRSYEG FEGRASLRTW LYRIATNACL TALEHRARRP LPAGIGTPHT
DPEGDLSAIP PEITWLQPFP DVLLDTGVSA AAGADPASVV AARSGLRLAL VAALQYLPPR
QRAVLILRDV LGWRSAEVAA LLDLTVAAVN SLLKRARARL AEVAPDVEDV AEPTQAEQRE
ILDRWAKAFV EADVDTLMKL LTEDAVYEMP PQPMWFRGAP FLRRLLTFRL GMHGKYRKMI
PIRANGQPAF AVYSGDDDRL LAAESVQVLT LRGGKVARVT TFRTPGLVAV AGFPMETELE
NED