| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3117 |
|---|
| Symbol | |
|---|
| ID | 8334470 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 3427522 |
|---|
| End bp | 3428055 |
|---|
| Gene Length | 534 bp |
|---|
| Protein Length | 177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644956264 |
|---|
| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | YP_003113867 |
|---|
| Protein GI | 256392303 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02983] RNA polymerase sigma-70 factor, sigma-E family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGGGC AAGCGCGGCT GGAGGAGTTC GCCGACTACG CGGCGGCTCG GCAAAGCCAC
CTGAAACGCA CGGCGTTCCT GCTGTGCGGG GACTGGCACG AGGCGCAGGA CCTCACCCAG
ACCGCGCTGC TCAACCTGTG CAAGGCCTGG CCTCGCGCCA AGCGGGCGGA CTCCATCGAC
GCCTATGCGC AGAAGACGCT CATCAACGCC TATCTCGGCG GCCGGCGCAA GCGGATCCGG
GAGCGCGAGG TCCACGCCGC GGTCGCGGTG ACGGCCACGC CGTTCGCCCG CGAGGACCAG
CCCGACCTGC GGCTGGCGCT GCTGGCCGCG CTGGCGGAGC TGCCGCCGCG CGGCCGGGCC
GTGGTGGTCC TGCGGTTCTG GGCGGACTTC AGCATCGAGG CCACCGCCGC CGCGCTCGAA
TGCTCGACCG GGAACGTGAA AAGCCACTCC TCGCGCGCCC TGGTCCGCCT GCGGGAGCTG
CTCGGGGATT CCCTCGCCGA CTTCGAGTAC TCACGGGAGG GCGGACAGCG ATGA
|
|---|
| Protein sequence | MDGQARLEEF ADYAAARQSH LKRTAFLLCG DWHEAQDLTQ TALLNLCKAW PRAKRADSID
AYAQKTLINA YLGGRRKRIR EREVHAAVAV TATPFAREDQ PDLRLALLAA LAELPPRGRA
VVVLRFWADF SIEATAAALE CSTGNVKSHS SRALVRLREL LGDSLADFEY SREGGQR
|
|---|
| |