| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3115 |
|---|
| Symbol | |
|---|
| ID | 8334467 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 3424460 |
|---|
| End bp | 3426214 |
|---|
| Gene Length | 1755 bp |
|---|
| Protein Length | 584 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644956262 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_003113865 |
|---|
| Protein GI | 256392301 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGATC CCTATGCGGA GCGGCCTTGG CTGCGGTTCT ACGCAGCAGG CGTGCCTACC
GACATCACGG TTCCCGACGT TCCTGTGACC TGGCTCTTAG ACAACGCGGC CGACACTTTC
CCGGACCGGA CCGCTTTGGT GTTCTTCGGC CGCAAGACCA GTTACAAGCA ATTGCGGCAG
GACGTCGACC GGCTCGCCGG GGCGCTGCGT GAACTCGGTG TCCGCAAGGG CGATCGGGTC
GCGCTGGTGT TGCCGAACTG CCCGGCGGCG GTCACGGCGT TCTTCGCCAT CACCCGCCTC
GGCGCGGTGA TGGTCGCGTG CAACCCCCTC TATACCGACT CCGAATTGCG GCACCAGCTC
ACCGACTCCG GCGCGAAGGT GGCGATCGTC TTCGACGGCG CCTACGCCAC CCTGGACGCC
GCGCGGCCGG GGACCGCGGT GGAGCAGGTG ATCTCGGTCT GCCTGGCCGA CTTCCTGCCC
TCGTTCAAGC GCAGGCTGCT CGACCTGCCG CTCGGCGCGG CCCGGGAGAA GCGCGAGCGG
CTGATCACGC CGCTGCCGCC GGGGGCGCGC GCCGTGCCGT ACACGGAGCT GATGGATTCC
TCGCCTGGCC CGGTCGAGCA GGTGATGGTG GACCCGGCCC TGGACCTGGC GGTGCTCCAG
TACACCGGAG GCACCACCGG CCGCCCGAAG GGCGCCATGC TCACCCACCG CAACCTGGTC
GCCAACGCGC ACCAGGTGCA GGCCTGGGAC CAGAACGCCA AGGTGGGGCG GGAGTCGGTG
CTGTGCGTGC TGCCGCTGTT CCACGTCTAT GGCCTGATGC TGTGCGTGGT CACCGGCGTG
CTGCTGGCCG GGACGCTGGT CCTGCTGCCG ACGTTCGACC CGGAGCTGGT GCTGGACGCG
GTGAAGCACG AGCGGCCCAC GGTGTTCCCG GGCGTGCCGC CGATCTACTC CAAGCTGCTG
GAGCATCCCA AGATCGGTAA ATACGATCTG CGCTCCATCC GCACCTGCAT CTCCGGCGCC
ATGCGCCTGC CGGTGGACAC CATCGACGCC TTTCAGAAGG CCACCGGCGG ACGCCTCGCC
GAGGGCTACG GCATGACCGA GTCCTCCCCG GTGACGCTGG CCAACCCGCT GAACGCCAAC
TCCCGGCCCG GCACGATCGG GCTGCCGCTG CCGAACACGC ACGTGAAGAT CGTCGACGAG
TTCCGCCAGG ACCGCGTGCT GCCGATCGGC ACGGCCGGGG AGCTGGTGGT GTTCGGACCT
CAGCTGTTCC AGGGCTACTG GAACCAGGAG GACGAGACCA AGCTCACGCT GCGCAACGGC
TGGCTGTACA CCGGCGACAT CGGGGTGATG TCGCCGGACG GCTACGTGAC CCTGATCGAC
CGCAAGCGCG ACGTGGTCAT CGCCTCCGGC TTCTCCATCT ATCCCTCCGA GATCGAGGAC
GTCCTGCGCG AACACCCGGC GGTCTACGAC GCGGCGGTGA TCGGCGTGCC GGACCCCTAC
CGCGGGGAGA CGGTGAAGGC GGTGATCCAG CTCGCCGAGG GGATGTCCGC CTCCGCCGAG
GAGCTGGACG TCTTCGCGCA CCAGCACCTG GCGCCCTACA AGGTGCCCAA GCTCATCTCC
TTCCGCGACG ACCTGCCCCG CAACATGATC GGGAAGGTGC TGCGGCGCGT GCTGCGCGAG
GAGCACGCGG CGGAGCATCC CGAGGACGGC GGGGAGGCTC CGGGGCAGGA TCCGTTCGCC
GACTACAAGC GGTGA
|
|---|
| Protein sequence | MPDPYAERPW LRFYAAGVPT DITVPDVPVT WLLDNAADTF PDRTALVFFG RKTSYKQLRQ
DVDRLAGALR ELGVRKGDRV ALVLPNCPAA VTAFFAITRL GAVMVACNPL YTDSELRHQL
TDSGAKVAIV FDGAYATLDA ARPGTAVEQV ISVCLADFLP SFKRRLLDLP LGAAREKRER
LITPLPPGAR AVPYTELMDS SPGPVEQVMV DPALDLAVLQ YTGGTTGRPK GAMLTHRNLV
ANAHQVQAWD QNAKVGRESV LCVLPLFHVY GLMLCVVTGV LLAGTLVLLP TFDPELVLDA
VKHERPTVFP GVPPIYSKLL EHPKIGKYDL RSIRTCISGA MRLPVDTIDA FQKATGGRLA
EGYGMTESSP VTLANPLNAN SRPGTIGLPL PNTHVKIVDE FRQDRVLPIG TAGELVVFGP
QLFQGYWNQE DETKLTLRNG WLYTGDIGVM SPDGYVTLID RKRDVVIASG FSIYPSEIED
VLREHPAVYD AAVIGVPDPY RGETVKAVIQ LAEGMSASAE ELDVFAHQHL APYKVPKLIS
FRDDLPRNMI GKVLRRVLRE EHAAEHPEDG GEAPGQDPFA DYKR
|
|---|
| |