Gene Caci_3098 details

Gene Information

• Locus tag: Caci_3098
• Symbol: def
• ID: 8334450
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Catenulispora acidiphila DSM 44928
• Kingdom: Bacteria
• Replicon accession: NC_013131
• Strand: +
• Start bp: 3405038
• End bp: 3405604
• Gene Length: 567 bp
• Protein Length: 188 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 644956245
• Product: peptide deformylase
• Protein accession: YP_003113848
• Protein GI: 256392284
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 29
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAACGGAG CGCGACCCTT GACCGTCCAG GCGATCCGCC TCTTCGGCGA CCCGGTCCTG 
ACCACACCGG CCACGCCGGT CGTCGACTTC GACAAGGAAC TGCGCACCCT TGTCAAGGAC 
CTCACCGAAA CGATGCTGGA CGCGCCCGGC AGCGGCCTCG CGGCGCCCCA GATCGGCGTC 
GGCCTGCGGG TCTTCACCTG GAACGTCGAC AACGAGCTCG GCCATCTGGT GAACCCCACC 
CTCGACCTGT CCGACGAGGA GCAGGACGGC GACGAGGGCT GCCTGTCCAT CCCGGACCTG 
GCCTTCCCCT GCAAGCGCGC CCTGCGCGTG GTCGCCAAGG GCTGGACCAT GCACGGCGAG 
CCGGTCGAGG TCGAGGGCAG CGAGATGCTG GCGCGCTGCA TCCAGCACGA GACCGACCAC 
CTGGACGGCG TGCTGTTCAT CGACCGCCTG GACCGGGAGT GGCGCAAGAA GGCGATGCGC 
GCGATCCGGC TGGCCGACTG GGCCAACGAC GGTGCCGAGC CGGTCGTGAA GGTGTCCCCG 
CACGCGACCT TCGGGCGGGC GATCTGA 

 

Protein sequence

MNGARPLTVQ AIRLFGDPVL TTPATPVVDF DKELRTLVKD LTETMLDAPG SGLAAPQIGV 
GLRVFTWNVD NELGHLVNPT LDLSDEEQDG DEGCLSIPDL AFPCKRALRV VAKGWTMHGE 
PVEVEGSEML ARCIQHETDH LDGVLFIDRL DREWRKKAMR AIRLADWAND GAEPVVKVSP 
HATFGRAI