| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3086 |
|---|
| Symbol | |
|---|
| ID | 8334438 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 3389908 |
|---|
| End bp | 3390558 |
|---|
| Gene Length | 651 bp |
|---|
| Protein Length | 216 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644956233 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_003113836 |
|---|
| Protein GI | 256392272 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1174] ABC-type proline/glycine betaine transport systems, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.450801 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.132405 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGTCCG CGGGCTTGTT CCCCCACATC CCCAGTTATC TGGGCACATA CGGTTCGCTG
ATCCAGCAGC AGCTCACGAT GGCGCTGCTG TCGGTGCTGT TCGGGCTGAT CATGGCGATC
CCGGTGGCGC TGCTGTGCGT GCGCTACCCG AAGATCTACC CGGCGGTGGT CGGGCTGCTG
ACCGTCATCT ACTCCCTGCC GTCCATCGCG CTGTTCGTGC TGCTGGTCCC CTCCACCGGA
CTCACGCAGA CCACGGTCAT CATCCCGCTG TCGTTCTACA GCCTGGCGGC GCTGGTCCCG
AACATCGTCG AGGGCATCCG CGGCATCCCC GAGGACGTCC GGCTGGCCGC GGTGGCCATG
GGCTACACCG GCACGCGCCG CCTGGTCGCG GTGGACCTGC CGCTGGCGGT GCCGCCGATC
ATGGCCGGGC TGCGGATCGC CACGGTCGGC AACATCAGCA TGGTCAGCGT CGGCACGGTC
ATCGGCGTCG GGGCGTTCGG CGCCCTGTTC ACCGCGGCGG CGCAGCTGAG CCGCTCGGAC
CTGGCGGTGA CCGGCATCGT GGTGATCGTC GCCCTGGCCC TGGCCTGCGA CCTGATCCTG
GTGATCATCC AGCGGCTGCT CACGCCGTGG AACAAGCGGA GGTCGGCGTG A
|
|---|
| Protein sequence | MRSAGLFPHI PSYLGTYGSL IQQQLTMALL SVLFGLIMAI PVALLCVRYP KIYPAVVGLL
TVIYSLPSIA LFVLLVPSTG LTQTTVIIPL SFYSLAALVP NIVEGIRGIP EDVRLAAVAM
GYTGTRRLVA VDLPLAVPPI MAGLRIATVG NISMVSVGTV IGVGAFGALF TAAAQLSRSD
LAVTGIVVIV ALALACDLIL VIIQRLLTPW NKRRSA
|
|---|
| |