Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_3054 |
Symbol | |
ID | 8334405 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 3361088 |
End bp | 3361993 |
Gene Length | 906 bp |
Protein Length | 301 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644956200 |
Product | hypothetical protein |
Protein accession | YP_003113804 |
Protein GI | 256392240 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.000511771 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.0514778 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCCAATC GTAGCTCCCG TTTCCGCAAG TTGTTAACGA AGGACCCTGC GACGCACGCC GCCCCAAAGT CGGAGCAGCG TTCGCTGCGT CTGGTCCCGC CGTCCGGCAA CATGCCACAG CGCCCCCGTC CGACGGCCGG CCCGGGTCCC GAGACCCAGC TGATGCCCGC GATCCGCGAG GCCGACGAGG CGTTCCTGAC CCGCGAACTG CCGAAAGTTT CGCCGGCGGC GGTGCTGCCG CTGTACCCGC ACACCCCGTA CTCTCCGATC TCCGGCCATA TGGCACCGCA ACTGCCGCTG GACGTGACGC AGGTGCTGCC TGTCGTCACC GCCCCGCGCC GATCCGTGGA CACCGCCGCA ACGCAGCTGC TGCCGGTGGC GGTGGACATG CCGCCGTCGG TGATGCACGC GGACCCAACC CGGTGGCACG ACCGCACGCA CGTCGAGGAC AACGACCTGG AGCCCGAGTC TCGCGGTCGG CACGTCCTGG ACGGGTTGAA GGCCGAGCAG GACCCGGCCC TAGAGCTGGC GCAGGCGGAG CAGCGGGTGG TGTCCGCAAT GGTGACGGGC GTTCCTCGGG TGAAGAACCC GGCGATGCGC CTAGCGGTGC GGATGTTCCG TGAGGCGCGG GACATGGGCC GCGCTCGCGA GTCCCGGTTA GCTCAGGACG ATGCCCGCCT GGACGCTACC GACGCGCGGA TCAAGGCGTT CGCGGAGCGT TGGGCTCACG ACGACGCGCA CTGGGACCGG GTCGCGCAGG TACTGAAGGC GAAGCAGGAG GCGTCCGACG CCGGCCAGCT GACTGCGGTC TACGACGCTG ATGGCACGGC GGCTGCGCTG TACAAGGTGG ACGAGCTGTC CCACGAGATC GTGCAGCGGG CGCGGGCGAA GGCCGGTGTG CGATGA
|
Protein sequence | MSNRSSRFRK LLTKDPATHA APKSEQRSLR LVPPSGNMPQ RPRPTAGPGP ETQLMPAIRE ADEAFLTREL PKVSPAAVLP LYPHTPYSPI SGHMAPQLPL DVTQVLPVVT APRRSVDTAA TQLLPVAVDM PPSVMHADPT RWHDRTHVED NDLEPESRGR HVLDGLKAEQ DPALELAQAE QRVVSAMVTG VPRVKNPAMR LAVRMFREAR DMGRARESRL AQDDARLDAT DARIKAFAER WAHDDAHWDR VAQVLKAKQE ASDAGQLTAV YDADGTAAAL YKVDELSHEI VQRARAKAGV R
|
| |