| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_2930 |
|---|
| Symbol | |
|---|
| ID | 8334280 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 3301396 |
|---|
| End bp | 3301902 |
|---|
| Gene Length | 507 bp |
|---|
| Protein Length | 168 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644956075 |
|---|
| Product | Appr-1-p processing domain protein |
|---|
| Protein accession | YP_003113680 |
|---|
| Protein GI | 256392116 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2110] Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00352819 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.00887383 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAGA TCACCTATGT GGTTGGCGAC GCCACGGACC CGGTTGGCGA CCGCCCGCAA
ATCATCGCGC ACATCGTGAA TGACGTCGGC GCGTGGGGCG CCGGCTTCGT ACTGGCACTG
TCGCGACGCT GGCCGGAACC CGAGGCGCAG TACCGGCGCG TGTTCCGGGA GTCGATGGAG
AAGTGGGGCC GGTTTCCCGG CTTGGATGCT GTGTTCATGG TGAAGGTCGG GGAAGGGCTG
CACGTCGCCA ACATGGTCGC GCAGCATGGC ACCCGGGGCC GGGACAATCC GCACCCGCTG
GACTACGGGG CACTGCGCAA GTGCCTGCGG ATCGTCGGCA CGGGCGCGTT GATGATGGGC
GCGAGCGTGC ACATGCCGAG GATTGGGTGT GGGCTGGCCG GCGGCAGATG GGGGCTGGTG
GAGCCGCTGA TCGTGGAGCA ACTGTGCAGT CGCGGAGTGC CGGTGGCGGT GTACGACCTT
CAGTCACCTG ACGATGTGTC ACCCTAA
|
|---|
| Protein sequence | MTEITYVVGD ATDPVGDRPQ IIAHIVNDVG AWGAGFVLAL SRRWPEPEAQ YRRVFRESME
KWGRFPGLDA VFMVKVGEGL HVANMVAQHG TRGRDNPHPL DYGALRKCLR IVGTGALMMG
ASVHMPRIGC GLAGGRWGLV EPLIVEQLCS RGVPVAVYDL QSPDDVSP
|
|---|
| |