Gene Caci_2798 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_2798 
Symbol 
ID8334147 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp3213206 
End bp3214822 
Gene Length1617 bp 
Protein Length538 aa 
Translation table11 
GC content69% 
IMG OID644955946 
Productresponse regulator receiver modulated serine phosphatase 
Protein accessionYP_003113552 
Protein GI256391988 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2208] Serine phosphatase RsbU, regulator of sigma subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCATCG CGGCGGTTCC CGACCGAGAG CCCGGACGCG TCTTGGTCGT CGATGACAAC 
GCGGCCAACC GGTATGTCTT CGCCCAGTGG CTGCGCCGAG GCGGTCACGA TGTCCAGGAG
GCGGCCGACG GTGCCGAGGC CCTGGACCTG TTGGCCGGTG CGGGACCGCT GCCCGAGGTC
GCCGTCCTCG ACGTCGTGCT GCCCGACATG ACCGGGTTCG AGCTGTGCCG GATCATCAAG
AAGGCTGACG CGACGGCTGA CATCCCCGTC GTGCACGTCT CCGCCTCGGC CATCTCGGTG
GCCGAGCGGG CTCAGGGGTT GGAGGGCGGA GCGGACGCCT ACCTGACCAA GCCCGTGGAC
CCGGAGGAAC TGCTCGCCAC CATCACCGCG GTGCTGCGGT ACACCAGAGC CCGCCGCACG
GCGCAGAACC TGGCTGAACG TCTGATGCTT CTCAACGAGG CGACGTTGCG GTTGCACGGC
GCCACCGACT ACCGGCAATT CGCCGCCGCG GCGGTCCAAG GGGTCCTCAG CGTCCTGGAC
ACAGACTCCG CCAGCGTCTA CCTGAGCTTG TCCGGACAGC CCGTGCGCAC ATTCCAGCTG
GACGGGCACT CTCCCGTGGT CTCCGAGCCG CTCGCCCCCG ATCTGCTCGA GCAGATCGCC
GACCGGGTTC TCGGAACACG GACCGGCGCC CGGGTCGTCT CGATGCCGGT GGAGAAGTGG
CGTCAGCTGG TACCGGGCCC GCCATTGGCG GGCGATGTCC TGATTGCCGT GGTCAAGGCG
CACGGCGGCC GGCCGCCGGT CTGCGTCGCG ATCTCCGGCG AGCGCACCGC GTCGGAGGAC
GACCACAGAC TGCTGCTGCA GATCGCGCAG GCGTGCTCCC TTTCCCTGGA GTCCCTCCGC
AACTACGCCG AGGAACACGC GCTCGCCCTG CAACTGCAGC GCTCGTTCTT GCCGGCTCGG
CTGCCGCGTC CGACAGGCGT GGAGCTGGCG GTGCGCTACG TCCCGGCCAG CGCGCACACC
GAGATCGGCG GCGACTTCTA CGAAGCCATC GACACCGCCG GCGGCCTGCT GCTGGTCATC
GGCGACGTCG CCGGCCACTC CCTGGAGGCG GCGATCGTGA TGGGCGAGGT CCGCCACGCC
TTGCGCGCGT TCGCCAGCGA GGGACACCCG CCGGAGTTGA TTTTGGAACT GCTGGACACT
TTGCTCACCC GCGGCCGTCC CCGCCCGGCC ACCGTCACGG TCTGCCTGGT GCTGGTCGAG
CCGGGCCAGC GGCGCCTGCG CGTCGCCAAC GCCGGCCACA TCCCGCCGCT GCTGGTCGCC
GACGGCACCA CCCGGTTCGT CACCGAACAC GGCCAGCTGC TCGGCATCGG GGGAGCCAGC
TTCACGGCGA CCACGGTCGA GCTGACCCGA CCCGTGCGGC TCGTCATGTG CACCGACGGT
CTGGTCGAGA CGCGCACCAC CTTGATCACC GAGAATCTCG ACATCTTCGA GGCGGCTGTA
GCGAAGGGCC CGGAGGATCT CGAGGAGTTG TGCGACGTCT TGCTCCAGAC CTTCGGTCAG
GGGAAAGACG ACGACATCGC GTTGCTCGTC ACGGATCTCG AGCCGGTTCA GGACTGA
 
Protein sequence
MSIAAVPDRE PGRVLVVDDN AANRYVFAQW LRRGGHDVQE AADGAEALDL LAGAGPLPEV 
AVLDVVLPDM TGFELCRIIK KADATADIPV VHVSASAISV AERAQGLEGG ADAYLTKPVD
PEELLATITA VLRYTRARRT AQNLAERLML LNEATLRLHG ATDYRQFAAA AVQGVLSVLD
TDSASVYLSL SGQPVRTFQL DGHSPVVSEP LAPDLLEQIA DRVLGTRTGA RVVSMPVEKW
RQLVPGPPLA GDVLIAVVKA HGGRPPVCVA ISGERTASED DHRLLLQIAQ ACSLSLESLR
NYAEEHALAL QLQRSFLPAR LPRPTGVELA VRYVPASAHT EIGGDFYEAI DTAGGLLLVI
GDVAGHSLEA AIVMGEVRHA LRAFASEGHP PELILELLDT LLTRGRPRPA TVTVCLVLVE
PGQRRLRVAN AGHIPPLLVA DGTTRFVTEH GQLLGIGGAS FTATTVELTR PVRLVMCTDG
LVETRTTLIT ENLDIFEAAV AKGPEDLEEL CDVLLQTFGQ GKDDDIALLV TDLEPVQD