| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_2798 |
|---|
| Symbol | |
|---|
| ID | 8334147 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 3213206 |
|---|
| End bp | 3214822 |
|---|
| Gene Length | 1617 bp |
|---|
| Protein Length | 538 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644955946 |
|---|
| Product | response regulator receiver modulated serine phosphatase |
|---|
| Protein accession | YP_003113552 |
|---|
| Protein GI | 256391988 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATCG CGGCGGTTCC CGACCGAGAG CCCGGACGCG TCTTGGTCGT CGATGACAAC
GCGGCCAACC GGTATGTCTT CGCCCAGTGG CTGCGCCGAG GCGGTCACGA TGTCCAGGAG
GCGGCCGACG GTGCCGAGGC CCTGGACCTG TTGGCCGGTG CGGGACCGCT GCCCGAGGTC
GCCGTCCTCG ACGTCGTGCT GCCCGACATG ACCGGGTTCG AGCTGTGCCG GATCATCAAG
AAGGCTGACG CGACGGCTGA CATCCCCGTC GTGCACGTCT CCGCCTCGGC CATCTCGGTG
GCCGAGCGGG CTCAGGGGTT GGAGGGCGGA GCGGACGCCT ACCTGACCAA GCCCGTGGAC
CCGGAGGAAC TGCTCGCCAC CATCACCGCG GTGCTGCGGT ACACCAGAGC CCGCCGCACG
GCGCAGAACC TGGCTGAACG TCTGATGCTT CTCAACGAGG CGACGTTGCG GTTGCACGGC
GCCACCGACT ACCGGCAATT CGCCGCCGCG GCGGTCCAAG GGGTCCTCAG CGTCCTGGAC
ACAGACTCCG CCAGCGTCTA CCTGAGCTTG TCCGGACAGC CCGTGCGCAC ATTCCAGCTG
GACGGGCACT CTCCCGTGGT CTCCGAGCCG CTCGCCCCCG ATCTGCTCGA GCAGATCGCC
GACCGGGTTC TCGGAACACG GACCGGCGCC CGGGTCGTCT CGATGCCGGT GGAGAAGTGG
CGTCAGCTGG TACCGGGCCC GCCATTGGCG GGCGATGTCC TGATTGCCGT GGTCAAGGCG
CACGGCGGCC GGCCGCCGGT CTGCGTCGCG ATCTCCGGCG AGCGCACCGC GTCGGAGGAC
GACCACAGAC TGCTGCTGCA GATCGCGCAG GCGTGCTCCC TTTCCCTGGA GTCCCTCCGC
AACTACGCCG AGGAACACGC GCTCGCCCTG CAACTGCAGC GCTCGTTCTT GCCGGCTCGG
CTGCCGCGTC CGACAGGCGT GGAGCTGGCG GTGCGCTACG TCCCGGCCAG CGCGCACACC
GAGATCGGCG GCGACTTCTA CGAAGCCATC GACACCGCCG GCGGCCTGCT GCTGGTCATC
GGCGACGTCG CCGGCCACTC CCTGGAGGCG GCGATCGTGA TGGGCGAGGT CCGCCACGCC
TTGCGCGCGT TCGCCAGCGA GGGACACCCG CCGGAGTTGA TTTTGGAACT GCTGGACACT
TTGCTCACCC GCGGCCGTCC CCGCCCGGCC ACCGTCACGG TCTGCCTGGT GCTGGTCGAG
CCGGGCCAGC GGCGCCTGCG CGTCGCCAAC GCCGGCCACA TCCCGCCGCT GCTGGTCGCC
GACGGCACCA CCCGGTTCGT CACCGAACAC GGCCAGCTGC TCGGCATCGG GGGAGCCAGC
TTCACGGCGA CCACGGTCGA GCTGACCCGA CCCGTGCGGC TCGTCATGTG CACCGACGGT
CTGGTCGAGA CGCGCACCAC CTTGATCACC GAGAATCTCG ACATCTTCGA GGCGGCTGTA
GCGAAGGGCC CGGAGGATCT CGAGGAGTTG TGCGACGTCT TGCTCCAGAC CTTCGGTCAG
GGGAAAGACG ACGACATCGC GTTGCTCGTC ACGGATCTCG AGCCGGTTCA GGACTGA
|
|---|
| Protein sequence | MSIAAVPDRE PGRVLVVDDN AANRYVFAQW LRRGGHDVQE AADGAEALDL LAGAGPLPEV
AVLDVVLPDM TGFELCRIIK KADATADIPV VHVSASAISV AERAQGLEGG ADAYLTKPVD
PEELLATITA VLRYTRARRT AQNLAERLML LNEATLRLHG ATDYRQFAAA AVQGVLSVLD
TDSASVYLSL SGQPVRTFQL DGHSPVVSEP LAPDLLEQIA DRVLGTRTGA RVVSMPVEKW
RQLVPGPPLA GDVLIAVVKA HGGRPPVCVA ISGERTASED DHRLLLQIAQ ACSLSLESLR
NYAEEHALAL QLQRSFLPAR LPRPTGVELA VRYVPASAHT EIGGDFYEAI DTAGGLLLVI
GDVAGHSLEA AIVMGEVRHA LRAFASEGHP PELILELLDT LLTRGRPRPA TVTVCLVLVE
PGQRRLRVAN AGHIPPLLVA DGTTRFVTEH GQLLGIGGAS FTATTVELTR PVRLVMCTDG
LVETRTTLIT ENLDIFEAAV AKGPEDLEEL CDVLLQTFGQ GKDDDIALLV TDLEPVQD
|
|---|
| |