| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_2746 |
|---|
| Symbol | |
|---|
| ID | 8334095 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 3147952 |
|---|
| End bp | 3150132 |
|---|
| Gene Length | 2181 bp |
|---|
| Protein Length | 726 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644955894 |
|---|
| Product | Ricin B lectin |
|---|
| Protein accession | YP_003113500 |
|---|
| Protein GI | 256391936 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG5520] O-Glycosyl hydrolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.865768 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCATAT CGACAAGACG AATCAGTCGC CGCAAAGGCG TGTCACTCAT CGCCGTCTTG
AGCGTGATCG GCGCGAGCGC GCTGGCGGTC GTGGTCCCGT CCGGTGCTGC GTATGCGGCT
GATACCGCGA CGATCAACGG AGCTACGACG TATCAGACGA TTGCCGGGTT CGGTGCCTCG
GAGGCGTTTG GTGAGGCGGC GGCGGTGATG AATGCCTCCT CCTCGGTGCA GCAGCAGGCG
CTGGCTGACT TGTACAGTCC GACGACCGGG GCGGGTTTGA CCATTCTGCG TAACGAGATT
GGTGCGACCT CCGGCAACAC GATCGAGCCG ACCAATCCTG GTGGCCCTGG TGCGACGCCG
AACTATCTGC CGTTGTCGCA GATCAACCAG GACATGGGCC AGTTGTGGTT TGCCCAGCAG
ATCAAGGCCC GTTTCGGTGT CACCAACGTG TACGCCGATG CCTGGAGTGC CCCAGGTTTC
ATGAAGACCA ACAATTCGGT ATCCGGGGGT GGTCAGGTTT GTGGGTCGGC CGGGGCTTCG
TGTTCCAGTG GTGATTGGCG TCAGGCGTAT TCGAACTATC TGGTGCAGTA CGCCAGGGAC
TACGCGGCGG CGGGTGTGCC GCTGACCTAT CTGGGCCCGT CGAACGAGCC TGACTACAGC
ACCAACTACG ACAGCATGTC GATGAGTCCG GCGCAGATGG CCAGTGTGGT CGATGTGCTC
GGGCCGACGT TGCGGAGCTC GGGGCTGGCC ACTCAGGTCA CTTGTTGTGC GGCGACTGGT
TGGCCGAAGG CTGGGCAGTA TGCGGCGGCG ATTGAGGCGG ATCCGACGGC GTTGGCTGCG
GTGGGCATGG TGGGCGGGCA TGGCTACAGT GGGGCTCCGA CTTCGCCGTT GCCGGGTTGG
ACCAAGCAGT CGTGGGAGAC TGAATGGTCG ACTTTCGAGG GTTTCAGCTC TGCCTGGGAT
GACGGCTCCG ATGCCTCCGG GATGGCGTGG GCTCAGCACA TCAACCAGGG GTTGACTGGT
GCGAACCTGA ACGCGTTCCT GTATTGGTGG GGCAGTACCA CCCCGTCGGA GAACGGTGAC
AATGAGGGGC TGTTGGAGAT CAACGGCAGC TCGGTGATTC CGACCGGCCG GTTGTGGGCG
TTCGCGAACT ACAGCCGCTA CATCCACCCC GGTGCTGTCC GTATCGGGGC GAGCAGCTCC
AACGGCGCGG TGAACCTGAG CGCGTACAAG AACACCGACG GCTCCTTGGC TATCGTGGCG
CTTAACACCG GCAGCGGCTC GGACGCGCTC ACCTATTCGC TGGCCAATAC CGGCGTGGCC
AACGGCGCCA CCGTGACCCC GTACCTGACC AACAACTCGA ACCAAGTCGC AGCCCAGGGC
ACGACGACGG TCGCCGGCGG CGCCTTCACC GCGACCGTGC CGGGCCGCTC CCTGGTGACG
TATGTGATCC CAGCCGGCGT GGTGAGCGGC AACACCATCA CAGTGACCAA CCCGGGCTCC
CAGACCGGAA CCGCCGGGAC GGCGATCAGC GGCCTGCAGA TCCATGGCGC CGACTCGGCG
TCCGGCCAGA CGCTGACCTA CAGCGCCACC GGCCTGCCGA CCGGCCTGTC GATCTCGCCG
TCCGGCCTGA TCACCGGCAC GCCGAGCGCA GGCGGGACCT CCACGGTGAC GGTCACCGCG
ACCGACGCGA CCGGTGCGTC AGGGTCCGCA TCGTTCACCT GGACGATCAC CGGCTCGACC
GGCGGCGGCT TCCCCAGCGG CTACCACCGC CTGGTCATCG CCAAGAGCAG CCTGTGTCTG
GACGTGTTCG GCAACACCGG CACCGCCGGT GCGGCCATCG ACCAGTACAC CTGCAACAGC
CAGAGCAACC AGCAGTTCCA GTTCGTCCCG GTCTCCGGCG GCTACGGCCA GATCCAGGCC
CAGAACTCCA GCCAGGACGT GACCGTGGCC AATAGCTCCA CCGCCCAAGG CACCCCGGAC
ATCGTCCAGC AGCCGGTCAG CAGCTCGGCC GCCAGCCTGT GGCTGCCCCA GCAGCAGTCC
GACGGCTCCT GGCAGTTCAA GAACCAGAAC AGCGGACTGT GCCTGGACGT CTACGGCAAC
GGCAGCACCA CCGGCCAGCA ACTGGACCAA TGGCCCTGCA AGAACGCACC CGGAACCAAC
CAGGACTTCA ACCCCCGCTG A
|
|---|
| Protein sequence | MPISTRRISR RKGVSLIAVL SVIGASALAV VVPSGAAYAA DTATINGATT YQTIAGFGAS
EAFGEAAAVM NASSSVQQQA LADLYSPTTG AGLTILRNEI GATSGNTIEP TNPGGPGATP
NYLPLSQINQ DMGQLWFAQQ IKARFGVTNV YADAWSAPGF MKTNNSVSGG GQVCGSAGAS
CSSGDWRQAY SNYLVQYARD YAAAGVPLTY LGPSNEPDYS TNYDSMSMSP AQMASVVDVL
GPTLRSSGLA TQVTCCAATG WPKAGQYAAA IEADPTALAA VGMVGGHGYS GAPTSPLPGW
TKQSWETEWS TFEGFSSAWD DGSDASGMAW AQHINQGLTG ANLNAFLYWW GSTTPSENGD
NEGLLEINGS SVIPTGRLWA FANYSRYIHP GAVRIGASSS NGAVNLSAYK NTDGSLAIVA
LNTGSGSDAL TYSLANTGVA NGATVTPYLT NNSNQVAAQG TTTVAGGAFT ATVPGRSLVT
YVIPAGVVSG NTITVTNPGS QTGTAGTAIS GLQIHGADSA SGQTLTYSAT GLPTGLSISP
SGLITGTPSA GGTSTVTVTA TDATGASGSA SFTWTITGST GGGFPSGYHR LVIAKSSLCL
DVFGNTGTAG AAIDQYTCNS QSNQQFQFVP VSGGYGQIQA QNSSQDVTVA NSSTAQGTPD
IVQQPVSSSA ASLWLPQQQS DGSWQFKNQN SGLCLDVYGN GSTTGQQLDQ WPCKNAPGTN
QDFNPR
|
|---|
| |