| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_2700 |
|---|
| Symbol | |
|---|
| ID | 8334049 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 3096361 |
|---|
| End bp | 3097869 |
|---|
| Gene Length | 1509 bp |
|---|
| Protein Length | 502 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 644955850 |
|---|
| Product | DEAD/DEAH box helicase domain protein |
|---|
| Protein accession | YP_003113456 |
|---|
| Protein GI | 256391892 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGTT CCAATCACTC CGCTTCCCAG CGCGGTTCCG ACTCGCGCTC GGGCTCCGGT
TCCGCCTCCG GCGGCTACCG CTCCTCGGGC GGCGGCCGTC GTTCCGGCGG CCAGTCGAGC
CGCCGGGGTC CCGCCGTGCA GGGCGAGTTC GCCCTTCCCG TCAGCTCCAC GCCGGCGCTG
CCCGCCGTCA CGGCGTTCAG CGAGCTCGAC TTGCCCGGTG CCCTGCTGCA GACGCTGGCG
CGCGAGGGCC TGACCGAGCC GTTCCCGATC CAGGCCTCGA CGCTGCCGAA CTCGCTGGCC
GGCCGCGACG TCCTGGGCCG CGGCCGCACC GGTTCGGGCA AGACCATCGC CTTCGGCTTG
GCGCTGCTGG CCCGCACCGC CGGACGCCGG GCCGAGCCCC GGGAGCCGCT GGCCCTGGTC
CTGGTCCCGA CCCGCGAGCT GGCGCAGCAG GTCACCGACG CGCTCACGCC CTACGCCCAC
GCCGTCCGGC TCCGGCTGGC CACGGTCGTC GGCGGGATAT CGATCGGCCG TCAGGCCCAC
GCGCTGCGCA GCGGTGCGGA GATCGTCGTG GCCACGCCCG GACGCCTCAA GGACCTGATC
GAGCGCGGCG ACTGCCGCCT GGACCAGGTC GCGATCACCG TCCTGGACGA GGCCGACCAG
ATGGCCGACA TGGGCTTCCT GCCCCAGGTC ACCGAACTCC TGGACCAGGT CGCACCGGGC
GGGCAGACCA TGCTGTTCTC GGCCACCCTG GACCGCAACG TCGACCGCCT GGTCCGCCGC
TTCCTCACCG ACCCGGTGAC CCACTCCGTC GACCCCTCGG CCGCGTCGGT CACCACCATG
GAGCACCACC TGCTGCACAT CGAGGGCAGC GACAAGAACG CCGCGGTGGC CCACATCGCC
TCCCGCGAGG GCGGCGTGAT CATGTTCACC GACACCCGGC ACGGCGCCGA CCGCCTGGTC
CGCGACCTGC TGGCCAACGG GGTGCGGGCC GCGGCGCTGC ACGGCGGCAA GTCCCAGCCG
CAGCGCACCC GCACCCTGGA GCAGTTCCGC GGCGGCCAGG TCACCGCCCT GATCGCCACC
AACGTCGCGG CCCGCGGCAT CCACATCGAG GGCCTGGACC TGGTCGTCAA CGTCGACCCG
CCGGCCGACC ACAAGGACTA CCTGCACCGC GGCGGCCGCA CCGCGCGCGC CGGGGAGTCC
GGCACCGTGG TCACCCTGGT CCTGCCCAAC CAACGCCGCG ACATGACCCG CATGATGGCG
GCCGCCGGCA TCACTCCGAA CTCCGCCCGG GTCCGCCCCG GCGACGCCGA ACTCGCCGCC
ATCACCGGAG CCCGCGTCCC CACCGGCATC GCCGTCACGA TCCCCAACCC CGTGGTCGAA
CGCCCGCGCT ACACTGGCTC CACCGGCGCG GGCCGCAGCC GCCGAAGCCG CCCCCCGCAC
ACAGGCCGCA CGCAGGCCAA CACCGCGTCC CGCACCCAGG CGCCCCGGCG CGCCCGAGCC
GGCGCCTGA
|
|---|
| Protein sequence | MIRSNHSASQ RGSDSRSGSG SASGGYRSSG GGRRSGGQSS RRGPAVQGEF ALPVSSTPAL
PAVTAFSELD LPGALLQTLA REGLTEPFPI QASTLPNSLA GRDVLGRGRT GSGKTIAFGL
ALLARTAGRR AEPREPLALV LVPTRELAQQ VTDALTPYAH AVRLRLATVV GGISIGRQAH
ALRSGAEIVV ATPGRLKDLI ERGDCRLDQV AITVLDEADQ MADMGFLPQV TELLDQVAPG
GQTMLFSATL DRNVDRLVRR FLTDPVTHSV DPSAASVTTM EHHLLHIEGS DKNAAVAHIA
SREGGVIMFT DTRHGADRLV RDLLANGVRA AALHGGKSQP QRTRTLEQFR GGQVTALIAT
NVAARGIHIE GLDLVVNVDP PADHKDYLHR GGRTARAGES GTVVTLVLPN QRRDMTRMMA
AAGITPNSAR VRPGDAELAA ITGARVPTGI AVTIPNPVVE RPRYTGSTGA GRSRRSRPPH
TGRTQANTAS RTQAPRRARA GA
|
|---|
| |