Gene Caci_2680 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_2680 
Symbol 
ID8334029 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp3073652 
End bp3075028 
Gene Length1377 bp 
Protein Length458 aa 
Translation table11 
GC content68% 
IMG OID644955831 
Productextracellular solute-binding protein family 1 
Protein accessionYP_003113437 
Protein GI256391873 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGCCT CCCAGAGAAC GCACAGATAC ACGAGGAAGC GCGAGTACAC AAGGAAGTAC 
AGATCCGCCT TCGTCGCCGT GGCCGCCGCC GTGGCCCTGC TCGCCGCCGC GTGCGGGAGC
GGTTCGAGCA AGTCCGACGC GGGATCGTCG GGCTCCGTGA GCGGACAGAC CATCACCTAC
TGGGCCAGCG ATCAGGGCAG CTCCATAGCC GACGACGTGA AGGTCTTGAC CCCCGAACTC
AACGCGTTCA CCGCGCAGAC CGGGGTGAAG GTCAAACTCG AGGTGATCGG GTGGGCCGAC
CTGCTGAACC GGGTCCTCGC GGCGACCACC TCCGGTCAGG GCCCTGACGT CCTGAACATC
GGCAACACCT GGTCCGCCTC GCTCCAGGCC TCCGGCGCCT TCCTGCCGAT CACCCCCGCC
ATCATGTCCC AGATCGGCGA CACCGGCCGA TTCCTGCCCG GCGCCCTCGC CGCGACCGGC
GCGGCCGGCA AGGACCCGGT CGGCGTGCCG ATCTACTCCA CGGCGTACGG GCTCTACTAC
AACAAGGCGG AGTTCGCCGC GGCCGGCATC ACCAAACCGC CGGCCACGTG GGAGGACCTG
GTCGCCGACG GCAAGCTGCT GACGACCGGC AGCCAGTGGG GTCTCACGCT GGAGGCGGCC
AGCCCCACGG AGAACTCCCA TCACGCGTTC GTGTTCGACG AGCAGCAGGG CGGGAACTGG
TTCGACTCCT CGAACAACCC GAACTTCGTC ACGCCGCAGA ACACCGCCGC CATCGAGGAC
TTCGTCAACC TCATGGGCAG CGACAAGATC GTCAACCCGA GCGACGCGGC GAACTCGAAC
GGCACCGAGG CGCTCCAGGA GTTCGCCGCG GGCAAGGCCG CCATGCTGAT GTGGCAGCCC
GCGGGCGCGA ACCTCCAGAA GTACGGCATG CAGCCCTCGG CGTACGGCGT CGTGCCGGTG
CCGTTCCCGG CGACCACCCC GAGCGGCGGC CGGCATGTCG ACTCCATCGT CGGCGGCATC
AACCTCTCGG TGTTCGCCAA CACCAAGCAC AAGGCCGCGT CGCTGGCCTT CCTGAAGTTC
ATGACCAGCG CCTCGACCGA GACCGCGCTG AACAAGGCAT ACGGCTCGCT CCCGTCGGTC
ACCGACGCGT ACACCGACCC GGCGTTCCAG ACCGCCGACG ACAAGGTGTT CCAGAGCGTG
CTGGCCTCCT CGGCCGGTTC GATGCCGGAG ATCGCGAAGG AGAGCGAGTT CCAGACGGTC
ATCGGCGCCG CGCTGAAGCA CCTGTTCGCG GACGCGGCCG GCGGGAAGCA GATCACTGAC
TCGCTCGTCA ACGCCGAGCT CACCACGGCA CAGCAGACGA TGCAGGCGAG CGGCTGA
 
Protein sequence
MNASQRTHRY TRKREYTRKY RSAFVAVAAA VALLAAACGS GSSKSDAGSS GSVSGQTITY 
WASDQGSSIA DDVKVLTPEL NAFTAQTGVK VKLEVIGWAD LLNRVLAATT SGQGPDVLNI
GNTWSASLQA SGAFLPITPA IMSQIGDTGR FLPGALAATG AAGKDPVGVP IYSTAYGLYY
NKAEFAAAGI TKPPATWEDL VADGKLLTTG SQWGLTLEAA SPTENSHHAF VFDEQQGGNW
FDSSNNPNFV TPQNTAAIED FVNLMGSDKI VNPSDAANSN GTEALQEFAA GKAAMLMWQP
AGANLQKYGM QPSAYGVVPV PFPATTPSGG RHVDSIVGGI NLSVFANTKH KAASLAFLKF
MTSASTETAL NKAYGSLPSV TDAYTDPAFQ TADDKVFQSV LASSAGSMPE IAKESEFQTV
IGAALKHLFA DAAGGKQITD SLVNAELTTA QQTMQASG