Gene Caci_2452 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_2452 
Symbol 
ID8333801 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp2772495 
End bp2773415 
Gene Length921 bp 
Protein Length306 aa 
Translation table11 
GC content69% 
IMG OID644955605 
Producttyrosine recombinase XerD 
Protein accessionYP_003113211 
Protein GI256391647 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID[TIGR02225] tyrosine recombinase XerD 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0952029 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.728507 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAACGGCG TGTCCGACGA CCTCGATTCC CGTGTGAAGG CCCATCTGGA GCACCTCTCC 
GTGGAGCGGG GGCTCAGTGC CAACACCCTT GCCGCGTATC GGAGAGACCT ATCGCGGTAC
AGGGTTTTCT TGGATACGCG GGACCGTGCA AATTTCAGCG ACATCGATCG CGCGGACGTC
TCCGCGTTCC TCGCGAGCCT CCAGGACGGC GCCGCATCGT CCGCCGCCCG CACAATGTCC
GCAGTGCGGG GATTGCACCG GTTCGCCGTG GCGGAAGGCT GGGTCGGTGT CGACGTCAGC
GATGACGTCG CTCCGCCCCA AGTACCCATG CGGCTGCCCA AGGCACTGCC GCTGGACGAT
ATCGAGCGCC TGCTCGCCGC GACCGAGATC GACGAACCCA TGGCGCTGCG GGACAGGGCC
CTGCTGGAGT TCTTGTACAG CACCGGCGCC CGCGTGAGCG AGGCGGTCGC GCTGGACGTG
GACGACATCG ACCGCGAGGA CCGCACGGTA GTCCTGGACG GCAAGGGCGG CAAGCAGCGC
CTCGTCCCCG TCGGCTCCTA CGCCTGCCGG GCGGTCGACG ACTATCTCGT GCGGCTGCGT
CCGGAGCTGA CGCGCAAGGC CCGATCGGGC AACGGCGGGG CGCTGTTCCT CAACGCGCGC
GGCGGTCGGC TGACGCGTCA GGGTGCGTGG ACGGTCCTCG GCGCGGTCGC CGAGCGCGTA
GGGCTCGCAG GCAGGGTTTC CCCGCACACT TTGCGGCACT CCTTCGCGAC CCACCTGCTG
GACGGGGGAG CGGACATCCG CACCGTGCAG GAGCTGCTGG GTCACAGTTC GGCCACGACG
ACCCAGATCT ACACCCGGGT GACTGTCGAC AGACTGCGTG AGGTGTACGC CACGAGCCAT
CCCAGGGCCC TGAACAGCTG A
 
Protein sequence
MNGVSDDLDS RVKAHLEHLS VERGLSANTL AAYRRDLSRY RVFLDTRDRA NFSDIDRADV 
SAFLASLQDG AASSAARTMS AVRGLHRFAV AEGWVGVDVS DDVAPPQVPM RLPKALPLDD
IERLLAATEI DEPMALRDRA LLEFLYSTGA RVSEAVALDV DDIDREDRTV VLDGKGGKQR
LVPVGSYACR AVDDYLVRLR PELTRKARSG NGGALFLNAR GGRLTRQGAW TVLGAVAERV
GLAGRVSPHT LRHSFATHLL DGGADIRTVQ ELLGHSSATT TQIYTRVTVD RLREVYATSH
PRALNS