Gene Caci_2442 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_2442 
Symbol 
ID8333791 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp2758538 
End bp2761393 
Gene Length2856 bp 
Protein Length951 aa 
Translation table11 
GC content71% 
IMG OID644955595 
ProductDEAD/DEAH box helicase domain protein 
Protein accessionYP_003113201 
Protein GI256391637 
COG category[L] Replication, recombination and repair 
COG ID[COG4581] Superfamily II RNA helicase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.312521 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCATCGC CCGCTGAGCC CCCGCGGGCT CCCGATGTGC CTGCCCTGTC GGAGTTCCAG 
CGCTTCCGGG GCGGCTACGA CTTCGATCTC GACGGGTTCC AGATCGAGGG CTGCCGCGCG
CTGGAGGCCG GGGACAGCGT CCTGGTCGCC GCCCCGACCG GGTCGGGCAA GACCGTCGTG
GGGGAGTTCG CCGTCCACCT GGCGCTCGCG CAGGGCGTCA AATGCTTCTA CACCACGCCG
ATCAAGGCGC TGTCCAACCA GAAGTACTCC GATCTGGTCG CCCGGCACGG CGCGGCCAAC
GTCGGCCTGC TGACCGGCGA CAACACGGTC AACGGCGAGG CGCCGATCGT CGTGATGACG
ACCGAGGTGC TGCGCAACAT GCTCTACGCC GGCTCCGGCA CGCTGTCCGG GCTCGGCTAC
GTCGTCATGG ACGAGGTCCA CTACCTCGCC GACCGCTTCC GCGGCGCGGT CTGGGAAGAG
GTCATCATCC ACCTGCCGGA GTCGGTGCGC CTGGTCGCGC TCTCGGCGAC GGTGTCCAAC
GTCGAGGAGT TCGCCGGCTG GCTGCGCACG GTGCGCGGCG ACACCAAGTC GATCGTCTGG
GAGCACCGTC CGGTGCCGCT GTGGCAGCAC GTGCTGTCCG GCCGCCGGAT GTTCGACCTG
TTCGCCAACG GCGCCGACGG CGAGGCGATG CCCGGCGCCA ACGGTCAGGG CGGGATCTCC
GCGGCCCGCG AACTGCGGGT CAACCCCGAG CTGGTGCGGT TGAACCGCGA GAGCTCGGAA
TCCATGTACA AGCGGGGCGG GCCTCGCGGC GGTGGCGGCG GCGGTGGCAA CCGGGGTCAG
CGCGGCCGGG TCCAGCGGCG CGGCCGCGGC GGCTGGGTCC CCAGCCGCGT CGACGTGATC
GAGAAGCTCG ACACCGAGGG CCTGCTTCCC GCCATCACCT TCATCTTCAG CCGGGCCGGC
TGCGACGCGG CGGTCCAGCA GTTCCTGCAC GGCGGTGTCA GGCTGCTGAA CGCCGACGAG
CGGGCCCGGG TCAAGGCGCA CGTGCTGGAG CGCACCGGGC GGATCCCGTC GGAGGATCTC
AACGTCCTGG GCTTCCACGA CTGGTTCGAC GGTCTGCAGC GCGGCGTGGC GGCCCACCAC
GCGGGCATGC TGCCGACGTT CAAGGAGATC GTCGAAGAGC TCTTCGTCCA AGGTCTGGTC
AAGGCGGTGT TCGCCACCGA GACGCTGGCG CTGGGCATCA ACATGCCGGC GCGCACCGTG
GTGATGGAGG CGCTGACCAA GTGGAACGGT GAGAACCACG TCGACCTGAC CGCCGGGGAG
TACACCCAGC TCACCGGGCG CGCGGGCCGG CGCGGGATCG ACATCGAGGG CCACGCGGTG
GTGCTGTGGC GCGCCGACCT GGACGCCAAG GCGCTGGCCG GGCTGGCCGG CACGCGGACG
TACCCGCTGC GCTCGTCGTT CAAGCCGTCC TACAACATGG CGGTCAACCT GGTCGGGCAG
TTCGGCGCCG AGCGTGCGCG CAACCTGCTG GAGACCTCCT TCGCGCAGTA CCAGGCCGAC
CAGGCGGTCG TCGGGCTGAC CCGCCAGGTG CGCAAGAACA CTGACGCGCT GGACGGCTAC
TCCGAGGCCA TAACCTGCCA CCTCGGCGAC TTCGACGAGT ACATGACGCT GCGGCGCCAG
CTCTCCGAGC GCGAGGCCGA CCTGTCGCGG CAGGGCGCTG CGAACCGCCG TGCCGCCGCG
CTGGAGTCGC TGGAGAGGCT CCAGCCCGGC GACATCATCG TGGTGCCCGC GGGCAAGCGC
GCCGGCGTGG CCGTGGTCCT GGACCCGGGG ATACCGGCCT CGACCGCCGG CCGCCCGAAG
CAGCTCACCG GCGACGGCCC GCGCCCGGTG GTCCTCACCG TCGACCGCCA GGTCGTCCGC
CTGTCGCTGA CGGACTTCCC CAGCCCGGCC GAACCGCTGG ACCACATGCG CGTCCCCAAG
TCCTTCAACG CCAAGTCGCC CCAGTCCCGC CGCGACCTGG CCACCGCCCT GCGCAACAAG
GCAGGCGACA AGGAGATCCC GCCCTACCGC AAGACCCGCT ACCGCTCCGA GGCGACCGAC
GACACGGAGA TCAGCCGCCT GCGCAAGGCC ATCCGAGCCC ACCCCTGCCA CGGCTGCCAG
GACCGCGAGG ACCACGCCCG CTGGGCCGAG CGCTTCCACA AGCTCGACCG CGAGACCAAG
CAGCTCCAAA AGCGCGTCGC AGGCCGCACC AACAGCATCG CCCGCGTCTT CGACCGAGTC
TGCGGCCTCC TGGAACAACT CGGCTACCTC GACGGTGACC AGGTCACCCC GATCGGCAAG
CGCCTCGGCA GGCTCTACAC CGAACTGGAC CTCCTGACCG CCGAAACCCT CCGCGCGGGC
CTGTGGGAAG GCCTGACCCC GCCCGAACTC GCCGCCTGCG TCTCAGCCCT GGTCTACGAA
GCCCGCCGAG CCGACGACGC GGGCCCACCC CGCCTCCCCG GCGGCGCCGT CCCCAAGACC
CTCGACGAAA TGGTCCGCCT CTGGGCCAAA CTCGAGGACC TGGAAACCGA CCACCACCTC
GAGTTCCAAC GCGAACCCGA CCTCGGCTTC GCCCTCCCGG CCTTCCACTG GGCCTCCGGC
AAAGCCCTGG AAGAAGTCCT GTGGGACGTA GAAATGCCCG CAGGCGACTT CGTCCGCTGG
TGCAAGCAAC TCATCGACCT CCTCGGCCAA GTAGCCAACG CCGCCGCCGA ACTGAAAGCC
ACCGACGGCA AGAAGAGCAC CGTCCGCGAA GCCGCCCAGG AGGCCATCGA CGGCCTGCGG
CGCGGCGTGG TCGCCTACTC GATGATGAAC GGGTGA
 
Protein sequence
MSSPAEPPRA PDVPALSEFQ RFRGGYDFDL DGFQIEGCRA LEAGDSVLVA APTGSGKTVV 
GEFAVHLALA QGVKCFYTTP IKALSNQKYS DLVARHGAAN VGLLTGDNTV NGEAPIVVMT
TEVLRNMLYA GSGTLSGLGY VVMDEVHYLA DRFRGAVWEE VIIHLPESVR LVALSATVSN
VEEFAGWLRT VRGDTKSIVW EHRPVPLWQH VLSGRRMFDL FANGADGEAM PGANGQGGIS
AARELRVNPE LVRLNRESSE SMYKRGGPRG GGGGGGNRGQ RGRVQRRGRG GWVPSRVDVI
EKLDTEGLLP AITFIFSRAG CDAAVQQFLH GGVRLLNADE RARVKAHVLE RTGRIPSEDL
NVLGFHDWFD GLQRGVAAHH AGMLPTFKEI VEELFVQGLV KAVFATETLA LGINMPARTV
VMEALTKWNG ENHVDLTAGE YTQLTGRAGR RGIDIEGHAV VLWRADLDAK ALAGLAGTRT
YPLRSSFKPS YNMAVNLVGQ FGAERARNLL ETSFAQYQAD QAVVGLTRQV RKNTDALDGY
SEAITCHLGD FDEYMTLRRQ LSEREADLSR QGAANRRAAA LESLERLQPG DIIVVPAGKR
AGVAVVLDPG IPASTAGRPK QLTGDGPRPV VLTVDRQVVR LSLTDFPSPA EPLDHMRVPK
SFNAKSPQSR RDLATALRNK AGDKEIPPYR KTRYRSEATD DTEISRLRKA IRAHPCHGCQ
DREDHARWAE RFHKLDRETK QLQKRVAGRT NSIARVFDRV CGLLEQLGYL DGDQVTPIGK
RLGRLYTELD LLTAETLRAG LWEGLTPPEL AACVSALVYE ARRADDAGPP RLPGGAVPKT
LDEMVRLWAK LEDLETDHHL EFQREPDLGF ALPAFHWASG KALEEVLWDV EMPAGDFVRW
CKQLIDLLGQ VANAAAELKA TDGKKSTVRE AAQEAIDGLR RGVVAYSMMN G