Gene Caci_2238 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_2238 
Symbol 
ID8333587 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp2539024 
End bp2540601 
Gene Length1578 bp 
Protein Length525 aa 
Translation table11 
GC content71% 
IMG OID644955391 
Productdrug resistance transporter, EmrB/QacA subfamily 
Protein accessionYP_003112997 
Protein GI256391433 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.166861 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0000537278 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCGCAGA CGGAGCAGGG AACGGCGGTA CCGCCGGGGG CGGCGGACGG CCGCAAATGG 
TGGGCGCTCG GCGGTCTCGC GCTGAGCTTG CTGGTCGTGG GCCTGGACCT GACGGTGTTG
AACGTCGCAC TGCCGACGCT GTCCACGTCG CTGAAGGCCT CGACCAGCCA GCTGCAGTGG
TTCGCGAACT CCTACAACCT GGCGATGGCC ATCGCGCTGC TGCCCGGCGG CCTGCTCGGC
GACCGGTTCG GCCGCAAGCG GATGCTGGTG ATCGCGCTGA CCGCCTTCGG CATCGCCTCG
GCGTTCTGCG CCTTCTCCTC CAACGCCGGC GAGCTGATCG CCTGGCGCGC GGTGCTCGGA
ATCGGCGCGG CGCTGCTGAT CCCGCTGAGT ATGAGTGTGC TGACCGTGCT GTTCACGCCC
GAGGAGCGCC CCCGCGCCAT GGGCATCTGG GCCACCGCCA ACATGCTCGG CATCCCGCTC
GGCCCGATCC TCGGCGGCTG GCTGCTGGAC CACTACTGGT GGGGCTCGGT GTTCCTGATC
AACCTGCCGG TCGTGGTGAT CGCCCTGCTC GCGGTGGTCT GGCTGGTCCC GGAGTCGCGC
GCCGAGCGCA AGCCGCGCAT CGACCTGCCG GGCCTGGCCG CCTCCGCGGT CGGCCTCGCC
GCGATCACCT ACGGCCTGAT CAAGGCCGGT GACGCCGGCT GGGGCTCGGC CGAGGCGCTG
ATCCCGCTCA TCGGCGGGCT GCTGGTCCTG GTCTTGTTCG TCCAGCTGCA GCGCAGTCCC
CAGCAGACGC TCATCGACCT GGAACTGTTC CGGGCCCGCG GCTTCACCTG GGGCACGATC
CTGTCGACCA TCGTCAGCTT CGCGCTGTTC GGGCTGATGT TCACGCTGCC GCAGTTCTAC
CAGGCCGTCG AGGGCGCCGA CGCGCTCGGA ACCGGCGTCC GGCTGCTGCC GATGATCGCC
GGTCTGATGG TCGGGGTCCG GGTCGGGCAA CCGTTCCTGA AGAGGGTCGG ACCCTCCCCG
CTGATCGGCG CCGGATTCGT CTTGCTGGCC ATCTCGCTGA TGATCGGCAC TGCCACCGGC
GTGCACGACG GCTACGGCTT CGTGGCGATC TGGCTCACGA TGGGCGGCGT CGGCGTCGGT
CTGGCCATGC CGATCACGAT GAACGTCGCG CTGGACGAGC TCAGCGCCGA GCGCGCCGGC
GTCGGCTCCG GCCTGCTGAT GACCATCCGC CAGATCGGCG GCACCTGCGC GGTGGCGATC
CTGGGCACGG TCCTGAACAG CCAGTACCGC AGCCATCTGG CACCGGCCGT GGCCCACCTC
CCGGCGCCTC TGGCCTCCGC GGCGACCCGC AGCGCCGGCT CCGGCGTCGC GGTGGCGGCC
CAGCTGCACT CGCCGTCGCT GCTGGAGTCG GTGCGCTCGG CGCTGGTGCA CGCCACGAGC
ATGACGATGT GGGTCAGCGC GGGCTTCGCG GTGATCGGCG TGCTGGCCGC CACGCAGCTC
CCCCGCAAGG CCCGAGTGAC CGAACGGCAG GCCGAGGCAG CAGAATCGAG TCGTGATCTC
CTCAATGCCG CAGACTGA
 
Protein sequence
MSQTEQGTAV PPGAADGRKW WALGGLALSL LVVGLDLTVL NVALPTLSTS LKASTSQLQW 
FANSYNLAMA IALLPGGLLG DRFGRKRMLV IALTAFGIAS AFCAFSSNAG ELIAWRAVLG
IGAALLIPLS MSVLTVLFTP EERPRAMGIW ATANMLGIPL GPILGGWLLD HYWWGSVFLI
NLPVVVIALL AVVWLVPESR AERKPRIDLP GLAASAVGLA AITYGLIKAG DAGWGSAEAL
IPLIGGLLVL VLFVQLQRSP QQTLIDLELF RARGFTWGTI LSTIVSFALF GLMFTLPQFY
QAVEGADALG TGVRLLPMIA GLMVGVRVGQ PFLKRVGPSP LIGAGFVLLA ISLMIGTATG
VHDGYGFVAI WLTMGGVGVG LAMPITMNVA LDELSAERAG VGSGLLMTIR QIGGTCAVAI
LGTVLNSQYR SHLAPAVAHL PAPLASAATR SAGSGVAVAA QLHSPSLLES VRSALVHATS
MTMWVSAGFA VIGVLAATQL PRKARVTERQ AEAAESSRDL LNAAD