Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_2238 |
Symbol | |
ID | 8333587 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 2539024 |
End bp | 2540601 |
Gene Length | 1578 bp |
Protein Length | 525 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644955391 |
Product | drug resistance transporter, EmrB/QacA subfamily |
Protein accession | YP_003112997 |
Protein GI | 256391433 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.166861 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0000537278 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCGCAGA CGGAGCAGGG AACGGCGGTA CCGCCGGGGG CGGCGGACGG CCGCAAATGG TGGGCGCTCG GCGGTCTCGC GCTGAGCTTG CTGGTCGTGG GCCTGGACCT GACGGTGTTG AACGTCGCAC TGCCGACGCT GTCCACGTCG CTGAAGGCCT CGACCAGCCA GCTGCAGTGG TTCGCGAACT CCTACAACCT GGCGATGGCC ATCGCGCTGC TGCCCGGCGG CCTGCTCGGC GACCGGTTCG GCCGCAAGCG GATGCTGGTG ATCGCGCTGA CCGCCTTCGG CATCGCCTCG GCGTTCTGCG CCTTCTCCTC CAACGCCGGC GAGCTGATCG CCTGGCGCGC GGTGCTCGGA ATCGGCGCGG CGCTGCTGAT CCCGCTGAGT ATGAGTGTGC TGACCGTGCT GTTCACGCCC GAGGAGCGCC CCCGCGCCAT GGGCATCTGG GCCACCGCCA ACATGCTCGG CATCCCGCTC GGCCCGATCC TCGGCGGCTG GCTGCTGGAC CACTACTGGT GGGGCTCGGT GTTCCTGATC AACCTGCCGG TCGTGGTGAT CGCCCTGCTC GCGGTGGTCT GGCTGGTCCC GGAGTCGCGC GCCGAGCGCA AGCCGCGCAT CGACCTGCCG GGCCTGGCCG CCTCCGCGGT CGGCCTCGCC GCGATCACCT ACGGCCTGAT CAAGGCCGGT GACGCCGGCT GGGGCTCGGC CGAGGCGCTG ATCCCGCTCA TCGGCGGGCT GCTGGTCCTG GTCTTGTTCG TCCAGCTGCA GCGCAGTCCC CAGCAGACGC TCATCGACCT GGAACTGTTC CGGGCCCGCG GCTTCACCTG GGGCACGATC CTGTCGACCA TCGTCAGCTT CGCGCTGTTC GGGCTGATGT TCACGCTGCC GCAGTTCTAC CAGGCCGTCG AGGGCGCCGA CGCGCTCGGA ACCGGCGTCC GGCTGCTGCC GATGATCGCC GGTCTGATGG TCGGGGTCCG GGTCGGGCAA CCGTTCCTGA AGAGGGTCGG ACCCTCCCCG CTGATCGGCG CCGGATTCGT CTTGCTGGCC ATCTCGCTGA TGATCGGCAC TGCCACCGGC GTGCACGACG GCTACGGCTT CGTGGCGATC TGGCTCACGA TGGGCGGCGT CGGCGTCGGT CTGGCCATGC CGATCACGAT GAACGTCGCG CTGGACGAGC TCAGCGCCGA GCGCGCCGGC GTCGGCTCCG GCCTGCTGAT GACCATCCGC CAGATCGGCG GCACCTGCGC GGTGGCGATC CTGGGCACGG TCCTGAACAG CCAGTACCGC AGCCATCTGG CACCGGCCGT GGCCCACCTC CCGGCGCCTC TGGCCTCCGC GGCGACCCGC AGCGCCGGCT CCGGCGTCGC GGTGGCGGCC CAGCTGCACT CGCCGTCGCT GCTGGAGTCG GTGCGCTCGG CGCTGGTGCA CGCCACGAGC ATGACGATGT GGGTCAGCGC GGGCTTCGCG GTGATCGGCG TGCTGGCCGC CACGCAGCTC CCCCGCAAGG CCCGAGTGAC CGAACGGCAG GCCGAGGCAG CAGAATCGAG TCGTGATCTC CTCAATGCCG CAGACTGA
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Protein sequence | MSQTEQGTAV PPGAADGRKW WALGGLALSL LVVGLDLTVL NVALPTLSTS LKASTSQLQW FANSYNLAMA IALLPGGLLG DRFGRKRMLV IALTAFGIAS AFCAFSSNAG ELIAWRAVLG IGAALLIPLS MSVLTVLFTP EERPRAMGIW ATANMLGIPL GPILGGWLLD HYWWGSVFLI NLPVVVIALL AVVWLVPESR AERKPRIDLP GLAASAVGLA AITYGLIKAG DAGWGSAEAL IPLIGGLLVL VLFVQLQRSP QQTLIDLELF RARGFTWGTI LSTIVSFALF GLMFTLPQFY QAVEGADALG TGVRLLPMIA GLMVGVRVGQ PFLKRVGPSP LIGAGFVLLA ISLMIGTATG VHDGYGFVAI WLTMGGVGVG LAMPITMNVA LDELSAERAG VGSGLLMTIR QIGGTCAVAI LGTVLNSQYR SHLAPAVAHL PAPLASAATR SAGSGVAVAA QLHSPSLLES VRSALVHATS MTMWVSAGFA VIGVLAATQL PRKARVTERQ AEAAESSRDL LNAAD
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