| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_2215 |
|---|
| Symbol | |
|---|
| ID | 8333560 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 2514392 |
|---|
| End bp | 2516029 |
|---|
| Gene Length | 1638 bp |
|---|
| Protein Length | 545 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644955365 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003112975 |
|---|
| Protein GI | 256391411 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.242507 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0157835 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCCA CGCTCGTCGC CAAGGAACTG ACCGCCGGGC ACGGCGACCG CGTCCTGTTC
TCGGGTCTGG ACCTCGTGGT CTCCCCCGGT GACGTGGTCG GGCTGGTCGG GGTGAACGGC
GCCGGCAAGT CCACGCTGCT GCGCCTGCTC GCCGGCCTGG ACCAGCCGGA GAACGGCGGT
GTCCAGATCA GTCCGCCGAG CGCGGCGATC GGCCACCTGC CGCAGGAGCC CGAGCGGCGC
CTGGAGGAGA CGGTCCGGCA GTTCCTGGCC CGCCGCACCG GCGTCACCGC CGCGCAGGAA
GCCCTGGACG CCGCGACCGC CGGGCTCGTC GAGGGCACGC CGGGCGCCGA CGACGCGTAC
TCCGAGAGCC TGGAGCGCTG GCTGAATCTG GGCGGCGCGG ACCTCGACGA GCGCGCCGAG
GCGGTAGCCG CCGACCTCGG GCTGGCCGTG GACCTGGACC AGGCGATGAC CTCGCTGTCC
GGCGGACAGG CGGCGCGCGC CGGGCTGGCC TCGCTGCTGC TGAGCCGCTA CGACGCCTTC
CTGCTCGACG AGCCGACCAA CGACCTGGAC CTGGACGGCC TGGAACGCTT GGAGCGCTTC
GTCTCCGAGC TGCGCGCGCC GGTGGTCCTG ATCAGCCACG ACCGCGAGTT CCTGGCCCGC
ACCGTCAACC GCGTCGTCGA GCTGGACCTC GCGCAGCAGG TGATCCGGCA GGTCGGCGGC
GGCTACGACG ACTTCCTGCG GGAGCGGGAG GTCGAGCGGC AGCACGCGCG CGACGAGTAC
GAGGAGTACG CCGACACCAA GGCGGGCCTG GAGGCGCGCG CCCGGATGCA GCGCAACTGG
CTGGAGAAGG GCGTCAAGAA CGCGCTGAAG AAGCGCCCGG ACAACGACAA GGTCCTGGCC
AAGGCGCGAG CCGAGGGCAC GGAGAAGCAG GCTGCGAAGG CCCGCCAAAC CGAGCGGCGC
ATCGAGCGTC TGGAGGTCGT GGACGAGCCC CGCAAGGAGT GGGAGCTGCG GATGACGATC
GCCGCCGCGC CCCGCTCCGG CTCCGTGGTG GCGACGCTGC GGGAGGCCGT GGTCCGCCGC
GGCGACTTCA CCCTGGGTCC GGTGAGCGTG CAGATCGACT GGGCCGAGAA GGTGGCGATC
ACCGGCGCCA ACGGCTCGGG CAAGACGACG CTGCTGGCCG CCCTGCTCGG CCGCCTGCCG
CTGGATGAGG GCACGGCAGC GCTGGGCTCC GGCGTGGTGG TCGGCGAGGT CGACCAGGCG
CGCGGGCTGT TCCTCGGCGA GCAGGCGCTG CTGCGCGCGT TCGAGGCGCA GGTCCCGGAG
ATCGAGCCGG CCGAGGTCCG CACGCTGCTG GCGAAGTTCG GACTCAAGGC TGAGCACGTA
CTCCGCCCGG CGGCGACGTT GTCACCGGGC GAGCGCACGC GCGCCGCGCT GGCGCTGCTC
CAGGCCAGGG GCGTGAACCT GCTGGTCCTG GACGAGCCGA CGAACCACCT GGACCTGGCC
GCGATCGAGC AGCTGGAGGC GGCGTTGGCG AACTACCCCG GGACCCTGCT GCTGGTGACG
CACGATCGGC GCATGCTGGA GGCGGTGCAG ACGACGCGGC GGCTGAGCGT GGACGGCGGC
AAGGTCACCG AGATCTGA
|
|---|
| Protein sequence | MSATLVAKEL TAGHGDRVLF SGLDLVVSPG DVVGLVGVNG AGKSTLLRLL AGLDQPENGG
VQISPPSAAI GHLPQEPERR LEETVRQFLA RRTGVTAAQE ALDAATAGLV EGTPGADDAY
SESLERWLNL GGADLDERAE AVAADLGLAV DLDQAMTSLS GGQAARAGLA SLLLSRYDAF
LLDEPTNDLD LDGLERLERF VSELRAPVVL ISHDREFLAR TVNRVVELDL AQQVIRQVGG
GYDDFLRERE VERQHARDEY EEYADTKAGL EARARMQRNW LEKGVKNALK KRPDNDKVLA
KARAEGTEKQ AAKARQTERR IERLEVVDEP RKEWELRMTI AAAPRSGSVV ATLREAVVRR
GDFTLGPVSV QIDWAEKVAI TGANGSGKTT LLAALLGRLP LDEGTAALGS GVVVGEVDQA
RGLFLGEQAL LRAFEAQVPE IEPAEVRTLL AKFGLKAEHV LRPAATLSPG ERTRAALALL
QARGVNLLVL DEPTNHLDLA AIEQLEAALA NYPGTLLLVT HDRRMLEAVQ TTRRLSVDGG
KVTEI
|
|---|
| |