| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_2175 |
|---|
| Symbol | |
|---|
| ID | 8333520 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 2468778 |
|---|
| End bp | 2469905 |
|---|
| Gene Length | 1128 bp |
|---|
| Protein Length | 375 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644955325 |
|---|
| Product | acyl-CoA dehydrogenase domain protein |
|---|
| Protein accession | YP_003112935 |
|---|
| Protein GI | 256391371 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.548032 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTCG AGCTGACCGA GGATCAGCGG GCGCTGGTCG ACCTCGTCGA CCAGATCCTC
GCCGACCACT GCGGCAACGA GCGTCTGGCC GAGCTGGAGA AGGAGGCGCG CGGCAGCGGT
CTCGGGTCCG TGCACGACGC CCAGGCCTGG CGCGCGCTGG CCGCCGCCGG AGCCGTCTCG
GCGCTGCTCC CCGACGACGG CGACCTGGGC ATCATGGGTC TGGCGCTGCT CGCCGAGGCG
GTGGGGAAGC ACACGGCGTA CGTCCCGATG GTCGCGGCGA TCGCGCTCGG CGCCTTGCCT
TTGGCGCGTT TCGGCGGCCA CGCGGACTTG CTCGACGCGG TGGCCTCTGG CTCCAAGCTG
GTCACCGCCG CGTTGGAGGA GCCTGGCGAG CCGGACTCCC TGATCACGAC GGCGCGCCAC
GGCGAGGCAG GCAGCAAGAC CTTCGTCCTG GACGGCGCCA AGATCATGGT TCCGTACGGC
GACCTCGCCG ACGCCATTCT GATCCCCGCT GCCCTGGACG ACGTGCCGGC GCTGTTCGTT
GTCCCGCGCT CGGCACTCAA GGTGACGTCG CTGCTCACCA CGGGGCGGCA GCCCTATGCA
GACCTCGAAC TGGACGCGGT GAGCGTGCCG GAGTCAGCGC TGCTCGCGCG CGGAACCGAA
GCGCTGGACT GGCTCCGCGA CCTCGGCACT GTCGCCTACG CCGCCGAGGC GTCCGGCGTG
TGCACCGAAG CGGTCGCCAT GACCGCGCGC TACACCAGTA CGCGCAAGCA GTTCGGCGAG
CCGATCGCCT CCTTCCAGGC TGTGGCTCAG CGCGCCGCCG ACGCCTTCAT CAGTGCCGAG
GCGCTGCGCC TGTGCGTGCT GCACGCCGCC TGGCTGATGG ACGACGCCGC GCGCGGCGGG
CACTCCGCGT CCTCTGCGGA GATCTCCGCG GACGTCGCTA TAGCGAAGTT CCACGCGGGG
GACGCAGGAT CGCGCGTCCT GCACGCCGCG CAGCATCTGC ACGGCGGCAT CGGCGTGGAC
ACCGACTACC CGCTGCACCG CTACTTCGTC CGGGGACAGC AGATCGAGCA GACCCTCGGC
ACCGCCACCC GGCAGCTCCT CCGCATCGGC GCACACCTGG CAGAGTAA
|
|---|
| Protein sequence | MDFELTEDQR ALVDLVDQIL ADHCGNERLA ELEKEARGSG LGSVHDAQAW RALAAAGAVS
ALLPDDGDLG IMGLALLAEA VGKHTAYVPM VAAIALGALP LARFGGHADL LDAVASGSKL
VTAALEEPGE PDSLITTARH GEAGSKTFVL DGAKIMVPYG DLADAILIPA ALDDVPALFV
VPRSALKVTS LLTTGRQPYA DLELDAVSVP ESALLARGTE ALDWLRDLGT VAYAAEASGV
CTEAVAMTAR YTSTRKQFGE PIASFQAVAQ RAADAFISAE ALRLCVLHAA WLMDDAARGG
HSASSAEISA DVAIAKFHAG DAGSRVLHAA QHLHGGIGVD TDYPLHRYFV RGQQIEQTLG
TATRQLLRIG AHLAE
|
|---|
| |