Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_2146 |
Symbol | |
ID | 8333491 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 2430493 |
End bp | 2431797 |
Gene Length | 1305 bp |
Protein Length | 434 aa |
Translation table | 11 |
GC content | 75% |
IMG OID | 644955296 |
Product | putative RNA polymerase, sigma-24 subunit, ECF subfamily |
Protein accession | YP_003112906 |
Protein GI | 256391342 |
COG category | [K] Transcription |
COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGAGC CCGCCGGCCG GGCCGCCGTC GCCGCGGTCT GGCACATCGA GTCCGCCCGC ATCGTCGGCG CGCTGGCCCG CTACACCGGC GACTTCGCGC TGGCTGAAGA CGTGGCGCAG GAGGCGCTCG CCGAGGCACT GGTCACCTGG CCGCGCGAGG GCGTCCCGCG CCATCCGGCG GGCTGGCTGC TCACCGTCGG CCGGCGCCGC GCGATCGACC ACTTCCGGCG CCACGCCGTG CAGGACCGCA AGTACGCCGT CCTCGCCCAG GAGTTGGGCG AGGGCGGCAC CGCTGCGGGC GGCGAGCCCG CCGATCCGCT GCGCGCCGGC GAGGCGGTGC TGTGGGACCC GGACCAGATC GACGACGACC TGCTGGCCCT GATGTTCGTC GCCTGCCATC CGGTGCTCTC CCGTGAGGCG CGCATCGCGC TGACCTTGCG CGTGGTCGCC GGTCTGACCA GCGACGAGAT CGCCAAGGCG TTCCTGGTCC CAACCGCGAC GGTGCAAGCC CGCATCACGC GTGCGAAGAA GGCGCTGGCC GCCGCCGGCG TCCCCTTCGA GGTCCCGCCG CCGGAGCAGC GCGCCGAGCG GCTCGGCTCG GTGCTCACCG TGGTCTACCT GATCTTCACG GAGGGCTCGT CGGCCAGTGC CGGCGACGCG CTCATCCGGC AGGACCTGGC GAACGAGGGC CAGCGCCTGG CCCGCATCCT GACCCGGCTC GTGCCCGACG AGCCGGAGGC CCACGGCCTG CTGGCGCTGA CGGAGCTGAC CGCGGCACGC TTCCCGGCGC GCGTCGGCAA GGACGGCGAA CCGGTCCTGC TCGCCGATCA GGACCGCCGC CGCTGGGACC ACGCGGCGAT CCGGCGCGGC AGGGCGGCGC TGTCCCGCGC GCAGCAGAGC GAGCGCGGCG TCGGCGCGTA CGGGCTGCAG GCGATGATCG CGGAGTGCCA CGCCGTCGCC GCCTCGGTCG AGGACACCGA CTGGGAGCGG ATCGTCTCGC TCTACGACGC CCTCGCACAC TTGGCGCCCT CGCCGGTGGT CGACCTCAAC CGCGCGGTCG CGCTGTCCAT GGCCCGCGGT CCCGCCGCCG CGCTGGAAGC CGTGGACGCC GTGGCGGCGG ACGGAGCGTG GGCGACCTCG CACCTGCTGC CGAGCGTGCG CGGCGAGTTG CTGCTCCGGC TCGGCCGCGG CGAGGAGGCG CGCGGAGAGC TGGAGCGAGC GATCAAGCTG TGCGGGAACG AGCGGGAGCG GGCGGTGTTG CGCGGCAAGC TCGCCGGGCT ACACCCGTCG CAGAACCCTG AGTGA
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Protein sequence | MTEPAGRAAV AAVWHIESAR IVGALARYTG DFALAEDVAQ EALAEALVTW PREGVPRHPA GWLLTVGRRR AIDHFRRHAV QDRKYAVLAQ ELGEGGTAAG GEPADPLRAG EAVLWDPDQI DDDLLALMFV ACHPVLSREA RIALTLRVVA GLTSDEIAKA FLVPTATVQA RITRAKKALA AAGVPFEVPP PEQRAERLGS VLTVVYLIFT EGSSASAGDA LIRQDLANEG QRLARILTRL VPDEPEAHGL LALTELTAAR FPARVGKDGE PVLLADQDRR RWDHAAIRRG RAALSRAQQS ERGVGAYGLQ AMIAECHAVA ASVEDTDWER IVSLYDALAH LAPSPVVDLN RAVALSMARG PAAALEAVDA VAADGAWATS HLLPSVRGEL LLRLGRGEEA RGELERAIKL CGNERERAVL RGKLAGLHPS QNPE
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