Gene Caci_2146 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_2146 
Symbol 
ID8333491 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp2430493 
End bp2431797 
Gene Length1305 bp 
Protein Length434 aa 
Translation table11 
GC content75% 
IMG OID644955296 
Productputative RNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003112906 
Protein GI256391342 
COG category[K] Transcription 
COG ID[COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGAGC CCGCCGGCCG GGCCGCCGTC GCCGCGGTCT GGCACATCGA GTCCGCCCGC 
ATCGTCGGCG CGCTGGCCCG CTACACCGGC GACTTCGCGC TGGCTGAAGA CGTGGCGCAG
GAGGCGCTCG CCGAGGCACT GGTCACCTGG CCGCGCGAGG GCGTCCCGCG CCATCCGGCG
GGCTGGCTGC TCACCGTCGG CCGGCGCCGC GCGATCGACC ACTTCCGGCG CCACGCCGTG
CAGGACCGCA AGTACGCCGT CCTCGCCCAG GAGTTGGGCG AGGGCGGCAC CGCTGCGGGC
GGCGAGCCCG CCGATCCGCT GCGCGCCGGC GAGGCGGTGC TGTGGGACCC GGACCAGATC
GACGACGACC TGCTGGCCCT GATGTTCGTC GCCTGCCATC CGGTGCTCTC CCGTGAGGCG
CGCATCGCGC TGACCTTGCG CGTGGTCGCC GGTCTGACCA GCGACGAGAT CGCCAAGGCG
TTCCTGGTCC CAACCGCGAC GGTGCAAGCC CGCATCACGC GTGCGAAGAA GGCGCTGGCC
GCCGCCGGCG TCCCCTTCGA GGTCCCGCCG CCGGAGCAGC GCGCCGAGCG GCTCGGCTCG
GTGCTCACCG TGGTCTACCT GATCTTCACG GAGGGCTCGT CGGCCAGTGC CGGCGACGCG
CTCATCCGGC AGGACCTGGC GAACGAGGGC CAGCGCCTGG CCCGCATCCT GACCCGGCTC
GTGCCCGACG AGCCGGAGGC CCACGGCCTG CTGGCGCTGA CGGAGCTGAC CGCGGCACGC
TTCCCGGCGC GCGTCGGCAA GGACGGCGAA CCGGTCCTGC TCGCCGATCA GGACCGCCGC
CGCTGGGACC ACGCGGCGAT CCGGCGCGGC AGGGCGGCGC TGTCCCGCGC GCAGCAGAGC
GAGCGCGGCG TCGGCGCGTA CGGGCTGCAG GCGATGATCG CGGAGTGCCA CGCCGTCGCC
GCCTCGGTCG AGGACACCGA CTGGGAGCGG ATCGTCTCGC TCTACGACGC CCTCGCACAC
TTGGCGCCCT CGCCGGTGGT CGACCTCAAC CGCGCGGTCG CGCTGTCCAT GGCCCGCGGT
CCCGCCGCCG CGCTGGAAGC CGTGGACGCC GTGGCGGCGG ACGGAGCGTG GGCGACCTCG
CACCTGCTGC CGAGCGTGCG CGGCGAGTTG CTGCTCCGGC TCGGCCGCGG CGAGGAGGCG
CGCGGAGAGC TGGAGCGAGC GATCAAGCTG TGCGGGAACG AGCGGGAGCG GGCGGTGTTG
CGCGGCAAGC TCGCCGGGCT ACACCCGTCG CAGAACCCTG AGTGA
 
Protein sequence
MTEPAGRAAV AAVWHIESAR IVGALARYTG DFALAEDVAQ EALAEALVTW PREGVPRHPA 
GWLLTVGRRR AIDHFRRHAV QDRKYAVLAQ ELGEGGTAAG GEPADPLRAG EAVLWDPDQI
DDDLLALMFV ACHPVLSREA RIALTLRVVA GLTSDEIAKA FLVPTATVQA RITRAKKALA
AAGVPFEVPP PEQRAERLGS VLTVVYLIFT EGSSASAGDA LIRQDLANEG QRLARILTRL
VPDEPEAHGL LALTELTAAR FPARVGKDGE PVLLADQDRR RWDHAAIRRG RAALSRAQQS
ERGVGAYGLQ AMIAECHAVA ASVEDTDWER IVSLYDALAH LAPSPVVDLN RAVALSMARG
PAAALEAVDA VAADGAWATS HLLPSVRGEL LLRLGRGEEA RGELERAIKL CGNERERAVL
RGKLAGLHPS QNPE