Gene Caci_2090 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_2090 
Symbol 
ID8333434 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp2373486 
End bp2374001 
Gene Length516 bp 
Protein Length171 aa 
Translation table11 
GC content67% 
IMG OID644955239 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003112850 
Protein GI256391286 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02983] RNA polymerase sigma-70 factor, sigma-E family 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGAAG CCGAAGACGA GTTCCGGGAA TTCGCGGTCG CGGTCCAGGG GCATTTGCGG 
CGCAGTGCGT ATCTGCTGTG CGGGGACTGG CATCTGGCCG AGGACATCGT CCAGAGTGCG
TTCGTCAAGA TCTTTCGGGT CTGGCGGCGG GTGCGGAAGG TCGAGAACCA GCTCGGGTAC
GCCCGGCAGG TGGTCTACCG GTGCTTCCTG GACCAGTACC GCAAGGACAA GAAGCAGCTT
CCCACGGTGC CGATCGCGGG GGCGGCGGAC CATGTGCTGG TGGAGTCAGT GCTCGACGAT
TCCTCCTTCG CGGGGGTCGT CGTGGAGGCG CTGGCTGAGC TGCCGCCGAG GGCGCGCGCC
GTGATCGTGC TCCGGTTCTG GGAGGACATG AGCGTCGAGC AGGCCGCCAC GGTGCTGGGT
GTGACGACGG GGACGGTGAA GAGCCAGACG TCGCGGGCCG TCGCACAGCT GCGCGGACGT
CTGGCGGCCG GGCTGAACGA ACAGGCTCGC TGGTGA
 
Protein sequence
MSEAEDEFRE FAVAVQGHLR RSAYLLCGDW HLAEDIVQSA FVKIFRVWRR VRKVENQLGY 
ARQVVYRCFL DQYRKDKKQL PTVPIAGAAD HVLVESVLDD SSFAGVVVEA LAELPPRARA
VIVLRFWEDM SVEQAATVLG VTTGTVKSQT SRAVAQLRGR LAAGLNEQAR W