| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_2022 |
|---|
| Symbol | |
|---|
| ID | 8333366 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 2287701 |
|---|
| End bp | 2290046 |
|---|
| Gene Length | 2346 bp |
|---|
| Protein Length | 781 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644955172 |
|---|
| Product | nucleic acid binding OB-fold tRNA/helicase-type |
|---|
| Protein accession | YP_003112783 |
|---|
| Protein GI | 256391219 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0531] Amino acid transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.8083 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.142802 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCTAGTG CTTTGGGGAT CGTCAAACGG GTCATGGTCG GCCGGCCGAT GCATAGCGAG
ATGCTCGGCG AGACCTTGCT CTCGAAGAAG ATCGCGCTGC CGGTGTTCGC CTCCGACGCC
TTGTCGTCGG TCGCCTACGC CACTGAGGAG ATCCTGCTTG TCCTATCGGC CGGCGGCCTG
GCGCTGCTGC ACTTCACGTG GTGGATCGCG GCGGCGGTCG GACTGCTGAT GCTGGTGGTC
GTCGCCTCCT ACCGGCAGAA CGTGCACGCC TACCCCTCCG GCGGCGGCGA CTACGAGGTC
GCCACGACCA ACCTGGGCCC GAAGGTCGGG CTCACGGTCG CCAGCGCCTT GATGGTGGAC
TACATCCTCA CCGTCGCGGT GTCGGTCTCC TCCGGCGTGG CGAACCTCGC CTCGGCCTTC
CCCGCGCTGA ACTCGCACGT CGTGCTGATC GCGGTGGCGG TCATCGCGGT CATCACGCTG
CTGAACCTGC GCGGCGTCCG GGAATCGGGC ACGGCGTTCG CGATCCCGAC GTACTGCTTC
GTCGTCGCGG TCGGCATCAT GATCGTGACC GGGCTGATCC GGATCGTGTT CGGCAGCGGC
CTGCACGCCG AGAGCGAGCA CTACACGATC TCCAACACCA AGCACTACAG CGGCGTCCTG
CTGATCTTCC TGCTGCTGCG CGCCTTCGCC TCCGGCTGCA CCGCGCTGAC CGGCGTCGAG
GCGATCAGCA ACGGCGTCCC GGCGTTCAAG CCGCCGAAGA GCAAGAACGC CGCGACCACC
CTGGCGCTGC TCGGCGGGAT CGCCGTCGCG ATGTTCGCCG GCGTCACCGC GCTGGCCCTG
GCCGGCCACG TCCACGCCGC CGGCGCCACG GACCTGGTCG GGCTCCCGGC CGGACAGCAG
CCGCGCACGG TCATCGCGCA GGTGTCGCGC TCGGTGTTCG GCGGCTCCTC GCCGTTCTTC
TTCGTCCTGC AGTTCGTCAC GGCGCTGATC CTGGTGCTGG CCGCGAACAC CGCCTTCAAC
GGTTTCCCGG TGCTGGGCTC GATCCTGGCC AAGGACGGCT ACCTGCCGCG CCAGCTGCAC
ACCCGCGGCG ACCGTCTCGC GTTCTCCAAC GGCATCCTGC TGCTGGCCGG CTTCGCGACG
CTGCTGGTGG TGGCGTTCAA CGCCTCGCCC ACGCGGCTGA TCCAGCTGTA CATCGTGGGC
GTGTTCGTGT CCTTCGTCTG CTCCCAGACC GGCATGATCC GGCACTGGAA CCGGCTGTTG
CGCACCACCG GGGACCCCGC TGAGCGCCGG CGCATGATGC AGTCGCGCGT CATCAACGCC
GTCGGCGCCG GCGTCACCGC CGCGGTGCTG GTGATCGTGC TGGTGACGAA GTTCGCCAAG
GGCGCCTGGA TCGTGGTGCT GGCGATGCCG ATCATCTGGC TGATCATGCG CGCGATCAAC
CGCCACTACG CCGCGGTCGC CCAGGAGCTG ACGCCCTCCG ACGAGGCCGC CTTCAGCCTG
CCGGCCAACA ACCACGCGAT CGTCCTGGTC TCCAAGCTGC ACCTGCCGAC CCTGCGCGCC
ATCGGCTACG CCAGCGCCAC CCGCCCCAGC ACGCTGGAGG CGGTGACGGT GAACCTGGAC
GACGCCGAGG TCGAGGTGCT GAAGGCGGAG TGGGAACGCC GCTCGATCCC GGTCCCGCTG
ACCGTGATCG CCTCGCCCTA CCGGGAGATC ACCCGCCCGA TCATCGAGTA CGTCAAACGG
GTCCGCACCG AGAACCCCGA CGACGTGGTG ACGGTGTACA TCCCGCAGTA CGTGCTCGGC
CACTGGTGGG AGCAGGTACT GCACAACCAG TCCGCCCTGC GTCTGAAGAG CCGGCTGCTG
TTCCAGCGCC GGGTCGTGGT CGCGGCGGTG CCGTACCAGC TCCAGTCCGC CACGGCCCGC
ATAGAGGCGG CCAAGGCGCA GAGCTCGTTC CAGGGGAGTG CCATGACCAA GCCCAAGCCG
CCGCGCCAAA GGACCCGGCT GCAGAAACTG ACGGCGGAGA CCGACGAGCT GGAGGCCGCC
GAGCTGTCCC AGGAGGTCTC GCCGAGCGGC GCCACGCCGA TCGCCGACTG CCCGGACCGC
CAGCCGGTGA TCCTGGCCGG GACGCTGCGC ACGGTGCGGC TGCGGCCGCG GGCCGGAGTG
CCGGTGCTGG AGGCCGATCT GTGGGACGGC ACCGGGTCGG TGACCGTCAG CTGGCTCGGC
CGGCGCCAGA TTCCCGGGAT CGCGCCGGGG CGCCGGATCA TGGTGCGCGG GCGCATCACG
ACGACCGGCG GGCAGCGCGC GGTGTACAAC CCGATCTACG AGCTGCGGCC CGGTCCGGCG
GACTGA
|
|---|
| Protein sequence | MPSALGIVKR VMVGRPMHSE MLGETLLSKK IALPVFASDA LSSVAYATEE ILLVLSAGGL
ALLHFTWWIA AAVGLLMLVV VASYRQNVHA YPSGGGDYEV ATTNLGPKVG LTVASALMVD
YILTVAVSVS SGVANLASAF PALNSHVVLI AVAVIAVITL LNLRGVRESG TAFAIPTYCF
VVAVGIMIVT GLIRIVFGSG LHAESEHYTI SNTKHYSGVL LIFLLLRAFA SGCTALTGVE
AISNGVPAFK PPKSKNAATT LALLGGIAVA MFAGVTALAL AGHVHAAGAT DLVGLPAGQQ
PRTVIAQVSR SVFGGSSPFF FVLQFVTALI LVLAANTAFN GFPVLGSILA KDGYLPRQLH
TRGDRLAFSN GILLLAGFAT LLVVAFNASP TRLIQLYIVG VFVSFVCSQT GMIRHWNRLL
RTTGDPAERR RMMQSRVINA VGAGVTAAVL VIVLVTKFAK GAWIVVLAMP IIWLIMRAIN
RHYAAVAQEL TPSDEAAFSL PANNHAIVLV SKLHLPTLRA IGYASATRPS TLEAVTVNLD
DAEVEVLKAE WERRSIPVPL TVIASPYREI TRPIIEYVKR VRTENPDDVV TVYIPQYVLG
HWWEQVLHNQ SALRLKSRLL FQRRVVVAAV PYQLQSATAR IEAAKAQSSF QGSAMTKPKP
PRQRTRLQKL TAETDELEAA ELSQEVSPSG ATPIADCPDR QPVILAGTLR TVRLRPRAGV
PVLEADLWDG TGSVTVSWLG RRQIPGIAPG RRIMVRGRIT TTGGQRAVYN PIYELRPGPA
D
|
|---|
| |