Gene Caci_1980 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_1980 
Symbol 
ID8333323 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp2237146 
End bp2237970 
Gene Length825 bp 
Protein Length274 aa 
Translation table11 
GC content71% 
IMG OID644955129 
Productprotein of unknown function DUF574 
Protein accessionYP_003112741 
Protein GI256391177 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.119584 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.918627 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACTCGA TCGACGCAGC AGAGTTGGCG CTGAGCCTGC CCGAGGTCGA CCCGGAGCGT 
CCGAGCCCGG CGCGCATCTA TGACTTCTGG CTCGGCGGCT CACAGAACTT CGAAGCGGAC
CGTGAGGCCG GGCGTCGTGC CGCCGAGGCG ATGCCCAAGT TGCCCGCCTC GGCCCAGGCG
AATCGCTCGT TCCTGCGGCA TCTCGTCGAG AACCTGGTGA CCGAGCGCGG GATCACGCAG
TTCCTGGACC TCGGCTCCGG CGTCCCCACG GTCGGCAACG TCCACGAGGT CGCGCAAGCC
GCCGATCCCG ACGCGACGGT CGTCTACATC GACCTGGATC CGATAGCCAT AGCCCACGCG
CGGGCTTTAC TCGCCGACAA CGCCACCGCC CACGCGGCGC TGGCCGACCT CCGCGAGCCC
GACGCCGTCC TGGACCACCC GCTGGTGCGC GACACGATCG ACTGGACCAA GCCGGTCGCC
GTCCTGCTGT TCTCGGTCCT GCACTTCATT CCGGACACGA TCCACCCCGA GCGCATCATC
AGCGCGTTCA TGGAACCCTG CGTGCCGGGC AGCTACCTCG CGCTGTCCCA CGGCGGTCCC
GACGAAGACG CGCCCGAGGG GCAGAAGGCG GCGGTGCGCG ACTACGCGAC GCGTACCGGC
GTGCCGGTCA CGCCGCGCAC GGCCGGGCAG ATCACGCCCT GGCTCGCCGG CCTCGAGATC
CAGCCGCCGG GCGTGACGGA CATCCGCGTG TGGTTGCCCA GCCTGGCCGA GAGCCCCAGC
GCGATCGCGC CGTTCGTCGG CGCATTGGCC CGCAAGCCCG CCTAG
 
Protein sequence
MDSIDAAELA LSLPEVDPER PSPARIYDFW LGGSQNFEAD REAGRRAAEA MPKLPASAQA 
NRSFLRHLVE NLVTERGITQ FLDLGSGVPT VGNVHEVAQA ADPDATVVYI DLDPIAIAHA
RALLADNATA HAALADLREP DAVLDHPLVR DTIDWTKPVA VLLFSVLHFI PDTIHPERII
SAFMEPCVPG SYLALSHGGP DEDAPEGQKA AVRDYATRTG VPVTPRTAGQ ITPWLAGLEI
QPPGVTDIRV WLPSLAESPS AIAPFVGALA RKPA