Gene Caci_1800 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_1800 
Symbol 
ID8333143 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp2039937 
End bp2040719 
Gene Length783 bp 
Protein Length260 aa 
Translation table11 
GC content71% 
IMG OID644954950 
Productshort chain dehydrogenase 
Protein accessionYP_003112562 
Protein GI256390998 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.837228 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGAGC GTCTGGCCGG CCGCGTGGCC GTCATCACCG GCGGTACCGG CGGGATCGGG 
ATGGCGACCG CGCGCCGGTT CGCCGCCGAG GGCGCGCACG TGGTGCTCGC CGACCTCGAC
GAGGCGAGCG GCAAGGCGGC GGCCGAGGAG GTGGGCGGTC TGTTCGTGCG GACCGACGTC
ACCGATGCCG AGCGCGTGGC GGCGCTGTTC CAGGCCGCCG TGGACACCTA CGGGTCGGTG
GACATCGCGT TCAACAACGC CGGTATATCC CCGCCCGACG ACGACTCGAT CCTGGACACC
GGCATGGAGG CCTGGGACCG GGTGCAGAAG GTCAACCTGA CCTCGGTGTA CCTGTGCTGC
AAGGCGGTCA TCCCGCACAT GCTGCGGCAG TTCGAGGCGA CCGGGCGCGG CGGCTCGATC
GTCAACACCG CCTCGTTCGT GGCGACCCTG GGTTCGGCCA CGTCGCAGAT CTCGTACACC
GCCTCCAAGG GCGGCGTGCT GGCGATGTCC CGCGAGCTCG GCGTGCAGTT CGCCAAGCAG
GGCATCCGGG TCAACGCGCT GTCTCCCGGG CCGGTGAACA CCCCGCTGCT CAAGGAGCTG
TTCGCCAAGG ACCCCGAGCG CGCCGCCCGG CGCCTGGTGC ACGTCCCGCG CGGCAGCTTC
GCCGAGCCCG AGGAGATCGC CGCCGCGGTG GCCTTCCTGG CCAGCGACGA CGCCTCGTTC
GTGAACGCCT CGAACTTCCT GGTCGACGGC GGGATCAGCG GCGCGTACGT CACCTCCCTG
TGA
 
Protein sequence
MTERLAGRVA VITGGTGGIG MATARRFAAE GAHVVLADLD EASGKAAAEE VGGLFVRTDV 
TDAERVAALF QAAVDTYGSV DIAFNNAGIS PPDDDSILDT GMEAWDRVQK VNLTSVYLCC
KAVIPHMLRQ FEATGRGGSI VNTASFVATL GSATSQISYT ASKGGVLAMS RELGVQFAKQ
GIRVNALSPG PVNTPLLKEL FAKDPERAAR RLVHVPRGSF AEPEEIAAAV AFLASDDASF
VNASNFLVDG GISGAYVTSL