| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_1790 |
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| Symbol | |
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| ID | 8333133 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 2028310 |
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| End bp | 2030319 |
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| Gene Length | 2010 bp |
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| Protein Length | 669 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644954940 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_003112552 |
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| Protein GI | 256390988 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCACTGC TGGAGGCGAT CCAGGGTCCG CGCGATCTGG ACGAGCTCAG CTCCGAGCAG
CTCGCCGAGC TCGCGACGGA GATCCGTGCT TACCTGATCC CGACCGTGGC GAAGACGAGC
GGGCACATCG GCCCGAACCT GGGTGTGGTG GAGCTCACCA TCGCGCTGCA CCGGGTCTTC
GACTCGCCCA AGGACACCAT CCTGTGGGAC GTAGGCCACC AGGCCTACGT GCACAAACTC
CTCACCGGGC GGCAGGACTT CTCCGCGCTG CGGCACTCCG GCGGGCTGTC CGGGTACCCG
GCGCGCGCGG AGTCCGGGCA CGACGTGATC GAGAACTCCC ACGCCTCCAC CGCGCTGGCC
TACGCCGACG GCATCGCCAA GGCGCACCAG GTGCGCGGCG TCACCGACCG CCAGGTGGTG
GCGGTGATCG GGGACGGCGC GCTGACCGGC GGCATGGCCT GGGAGGCGCT GAACAACATC
GCCGCGGCCA AGGACCGGCC GGTGATCATC GTCGTCAACG ACAACGAGCG CTCCTACTCC
CCGACCATCG GCGGGCTCGC CGACCACCTC GCGACCCTGC GGACCACCCA GGGCTACGAG
CGGTTCCTGG AGTGGGGACG CGGCATGCTC GGCCGCACGC CGGTCATCGG GACCCCGCTG
TACGAGGCGC TGCACGGCGT CAAGAAGGGC CTGAAGGACA TCGTCGCCCC GCAGGGGATG
TTCGAGGACC TGGGCATGAA GTACGTCGGC CCGGTGGACG GCCACGACAT CGCCGGCATG
GAGGCCGCGC TGCGGCGGGC CCGGCACTAC CACGGCCCGG TGATCGTGCA CGCGATCACC
CGCAAGGGCG AGGGCTACCC GGCCGCGCGC AATAACGTCA ACGACCAGCT GCACCAGGTC
GCCGTGGACA GCGACCCGGA GACCGGCCGG CCGCTGGTCC CCGCGGGTGA GTCCTGGACC
TCGGTGTTCG CCGACGAGAT GGTGCGGGTC GGCGCCGAGC GCGAGGACGT GGTGGGGATC
ACCGCGGCCA TGCTGCACCC CGTCGGGCTC GCCAAGTTCG CCGAGCGCCA CCCGGACCGG
ATCTTCGACG TCGGCATCGC CGAGCAGCAC GCGGTCACCT CCGCGGCCGG CATGGCCTTC
GCCGGGCTGC ACCCGGTGGT GGCGATCTAC GCGACCTTCC TGAACCGCGC CTTCGACCAG
GTCCTGATGG ACACCGCGCT GCACAACGCC GGCGTGACCT TCATCGCCGA CCGGGCCGGC
GTCACCGGCA ACGACGGCGC CAGCCACAAC GGCATGTGGG ACATGTCGAT CTTCCAGGTC
GTGCCCCGGC TGCGCATCGC CGCCCCGCGC GACGGCGCCC AGCTGCGGGC CCAGCTGCGC
GAGGCGCTGG ACGTCGACGA CGCCCCGACC ATGATCCGCT TCTCCAAGGG CACGGTCTGC
CAGGACATCC CCGCGGTCGC CAAGGCCGGC TCGATGGACG TGCTGCGCAC CACCGCGGGC
ACCGAGCTGA GCCCGGACGT GCTGATCGTC AGCGTCGGGG CGATGGCGCA GGTCTGCCTG
GACGTCGCCG AGCGGCTGGC GGACCAGGGC ATCGGCGCCA CCGTGGTGGA CCCGCGCTGG
GTCAAGCCGG TCGACCCGGT CGCGGTGATG TTGGCCGCCG AGCACCGCCT GGTGGTCACG
GTCGAGGACA ACGTCCGGGT CGGCGGCGTG GGCTGCATGG TCGCCCAGGC GCTGCGCGAC
GCCGGGGTGC ACACCCCGCT GCGCGACTTC GGCATCCCGG CGGAGTTCCT GGACCACGCC
AGCCGCGGCG AGGTGCTGGA GCAGATCGGC CTGACCGGGC AGCGGATCGC GCACGAGGTC
GTCGGTCTGG TCGCAGGTCT GGGCAGCGCG GCGGCGGCGA ACGCGGCGGC GAACGGCGCG
GGCTCCGGTT CCGGCAACGG AGCGGCGAAC GGAGCGGCCA ATGGCGCCGC CCTTCCCAAC
GGATCCGCAC CGAAAGTCAC GACGCGATAG
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| Protein sequence | MALLEAIQGP RDLDELSSEQ LAELATEIRA YLIPTVAKTS GHIGPNLGVV ELTIALHRVF
DSPKDTILWD VGHQAYVHKL LTGRQDFSAL RHSGGLSGYP ARAESGHDVI ENSHASTALA
YADGIAKAHQ VRGVTDRQVV AVIGDGALTG GMAWEALNNI AAAKDRPVII VVNDNERSYS
PTIGGLADHL ATLRTTQGYE RFLEWGRGML GRTPVIGTPL YEALHGVKKG LKDIVAPQGM
FEDLGMKYVG PVDGHDIAGM EAALRRARHY HGPVIVHAIT RKGEGYPAAR NNVNDQLHQV
AVDSDPETGR PLVPAGESWT SVFADEMVRV GAEREDVVGI TAAMLHPVGL AKFAERHPDR
IFDVGIAEQH AVTSAAGMAF AGLHPVVAIY ATFLNRAFDQ VLMDTALHNA GVTFIADRAG
VTGNDGASHN GMWDMSIFQV VPRLRIAAPR DGAQLRAQLR EALDVDDAPT MIRFSKGTVC
QDIPAVAKAG SMDVLRTTAG TELSPDVLIV SVGAMAQVCL DVAERLADQG IGATVVDPRW
VKPVDPVAVM LAAEHRLVVT VEDNVRVGGV GCMVAQALRD AGVHTPLRDF GIPAEFLDHA
SRGEVLEQIG LTGQRIAHEV VGLVAGLGSA AAANAAANGA GSGSGNGAAN GAANGAALPN
GSAPKVTTR
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