Gene Caci_1768 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_1768 
Symbol 
ID8333111 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp2002033 
End bp2002980 
Gene Length948 bp 
Protein Length315 aa 
Translation table11 
GC content71% 
IMG OID644954918 
ProductABC transporter related 
Protein accessionYP_003112530 
Protein GI256390966 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones39 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones48 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCACCC TTCAGGAGCT TGAGTTCGCC GCCGGGCGGC CGAAAGAGAT CTACGGCGAG 
GACGCCAAGA TCGTCTGCGA CAACCTGGTC CGCATCTACA AGACCGACGG CATCGAGGTC
CAGGCTCTGC AGGGTCTGGA CCTGCTGGTG CGCGCCGGGG AGCTGGTCGC GATCGTCGGC
GCCTCCGGCA GCGGCAAGTC CACGCTGCTG AACATCCTGT CCGGGCTCGA CACCCCGACC
GCCGGCGTCG CCAGGGTCGG CGGCTATGAC CTGCTCACCA TGAAGAGCCG GGACCGGCTG
CGCTACCGGC GCTCGACGGT CGGCTTCATC TGGCAGCAGA CGGCGCGCAA CCTGCTGCCC
TACCTCAACG CCGCCGACAA CGTGGCGCTG CCGATGGGCT TCGCCGGCAA GAAGCGCAAG
TACGCGCGGC GCCGCTCCGG GGAGCTGCTG GACCTGCTGG GCGTCGGCCA CTGCGCCGGG
CGCCGCCCCG GGCAGATGTC CGGCGGCGAG CAGCAGCGGG TCTCGATCGC GGTGGCGCTG
GCCAACGACC CCGAGGTGGT GTTCGCCGAC GAGCCGACCG GCGAGCTGGA CTCCGCGACC
AGCCAGCAGG TCTTCGACGC GCTGCGCACC GCGAACGAGG AGCTGGGCGT CAGCATCGTG
GTGGTCACGC ACGACCACGA GGTGACCGAC CAGGTCCAGC GCACCGTGGA GATCCGCGAC
GGCCGCACCT CGAGCGAGGT CCTGCGGCGC GGCGACGAGG GCGCGCGGGC CGAGCAGTTC
GCGGTCCTGG ACCGCGCCGG CCGCGTGCAG TTGCCGAAGG AGTACGTGGA CGCGCTGCGG
ATGAAGGACC GGGTCCGGCT GGCGAAGAAC CCTGATCACA TCGGGGTCTG GCCGGATCTG
GCGCAGGGCT CTGATGGTGC CGCAGGTTCC GTGGGCGAGA GGGCGTAG
 
Protein sequence
MSTLQELEFA AGRPKEIYGE DAKIVCDNLV RIYKTDGIEV QALQGLDLLV RAGELVAIVG 
ASGSGKSTLL NILSGLDTPT AGVARVGGYD LLTMKSRDRL RYRRSTVGFI WQQTARNLLP
YLNAADNVAL PMGFAGKKRK YARRRSGELL DLLGVGHCAG RRPGQMSGGE QQRVSIAVAL
ANDPEVVFAD EPTGELDSAT SQQVFDALRT ANEELGVSIV VVTHDHEVTD QVQRTVEIRD
GRTSSEVLRR GDEGARAEQF AVLDRAGRVQ LPKEYVDALR MKDRVRLAKN PDHIGVWPDL
AQGSDGAAGS VGERA