| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_1761 |
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| Symbol | |
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| ID | 8333104 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 1991902 |
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| End bp | 1993581 |
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| Gene Length | 1680 bp |
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| Protein Length | 559 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644954911 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_003112523 |
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| Protein GI | 256390959 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCGGCCA GCACTTCCCG TCCACTGCCC GCCGAGATCG CCGAGTCCGC CCACCTCGTG
GCGCTCATCG AGCGGGGCAG GGCGCAGGGA CACATTGCCG CAGACGAGGT GCGGCAGGCC
TTTGAAGAGG CGGACATCCC GATGGCCAAG GCCAAGAGCG TCATGCGGGC CCTGACCACC
GTACTCCACG AGGACGGCGT CGATCTGACG GTCAACGCCG TGCAGAGCGC CGGGGTCGCG
CGCAAGCGCG TCGCCGCGGC GAGCAAGACC GCGGCCAAGA AGACGACCAC GGCCACCGCG
GCCAAGGCCG CGACGGTCAA GAAGGCCGCC GCCAAGACCG CCGCGCCGGC TGTCGCGGCC
GCCAACGGCG CGTCCGAGGA AGGCGCCGAG GCCGGTTCGG CCGCGGCGAA GAAGACCGCC
GCGGTGAAGA AGACCGCGGC CAAGAAGACC GCTGCCAAGG GCGCCGACGG CGCCGAGGCC
GGCGCCGGTC CGGCCAAGAA GGCGGCGGCG AAGAAGGCCG CGCCGGGCAA GAAGGCCGCC
GGCGCGAAGG GCGACGAGGA GGACGGCGAG AGCGTCGAAC TCGAGGAAGA CGTCGACCTG
GAGATCGAAC TCGACGACGA GGACGCCCCC GATCTGGTGG TCGCCGTCGC CGACGAGGAA
GGCGAGGAAG CCTCCGAGGG CGACGGGGCC ACCCCCGGCG ACAAGGAGGA GGGCTTCGTC
CTGTCCGACG ACGAGGACGA CGCCCCCGCC CAGCAGGTCG CCTCCGCCGG CGCCACCGCG
GACCCGGTGA AGGACTACCT CAAGCAGATC GGCAAGGTCC CGCTGCTCAA CGCCGAGCAG
GAAGTCGAGC TCGCCAAGCG CATCGAGGCC GGCCTGTTCG CCGAGGAGAA GCTGAACGAC
GGCGAGCCGC TGACCCCGGA GTTCCGGCGC GAGCTGGACA TCATCGCCGA GGACGGCCGC
CGGGCCAAGA ACCACCTGCT GGAGGCGAAC CTGCGCCTCG TGGTCTCCCT GGCCAAGCGC
TACACCGGCC GCGGCATGCT GTTCCTGGAC CTGATCCAGG AGGGCAACCT CGGTCTGATC
CGCGCGGTCG AGAAGTTCGA CTACACCAAG GGCTACAAGT TCTCGACCTA CGCGACGTGG
TGGATCCGTC AGGCCATCAC CCGCGCCATG GCCGACCAGG CGCGGACCAT CCGCATCCCG
GTCCACATGG TCGAGGTCAT CAACAAGCTG GCCCGCGTGC AGCGCCAGAT GCTCCAGGAC
CTCGGGCGCG AGCCCACCCC GGAGGAGCTG GCCAAGGAAC TGGACATGAC GCCCGAGAAG
GTCGTCGAGG TCCAGAAGTA CGGCCGCGAG CCGATCTCCC TGCACACCCC CCTGGGCGAG
GACGGCGACA GCGAGTTCGG CGACCTCATC GAGGACTCCG AGGCGGTCGT CCCGGCCGAC
GCGGTGTCGT TCACGCTGCT GCAGGAACAG CTGCACTCGG TGCTCGACAC GCTCAGCGAG
CGGGAGGCCG GCGTGGTGTC CATGCGGTTC GGGCTGACCG ACGGCCAGCC CAAGACGCTG
GACGAGATCG GCAAGGTCTA CGGGGTCACG CGCGAGCGGA TCCGGCAGAT CGAGTCCAAG
ACCATGTCGA AGCTGCGGCA CCCGTCGCGC TCGCAGGTTC TGCGGGACTA CCTGGACTAG
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| Protein sequence | MSASTSRPLP AEIAESAHLV ALIERGRAQG HIAADEVRQA FEEADIPMAK AKSVMRALTT
VLHEDGVDLT VNAVQSAGVA RKRVAAASKT AAKKTTTATA AKAATVKKAA AKTAAPAVAA
ANGASEEGAE AGSAAAKKTA AVKKTAAKKT AAKGADGAEA GAGPAKKAAA KKAAPGKKAA
GAKGDEEDGE SVELEEDVDL EIELDDEDAP DLVVAVADEE GEEASEGDGA TPGDKEEGFV
LSDDEDDAPA QQVASAGATA DPVKDYLKQI GKVPLLNAEQ EVELAKRIEA GLFAEEKLND
GEPLTPEFRR ELDIIAEDGR RAKNHLLEAN LRLVVSLAKR YTGRGMLFLD LIQEGNLGLI
RAVEKFDYTK GYKFSTYATW WIRQAITRAM ADQARTIRIP VHMVEVINKL ARVQRQMLQD
LGREPTPEEL AKELDMTPEK VVEVQKYGRE PISLHTPLGE DGDSEFGDLI EDSEAVVPAD
AVSFTLLQEQ LHSVLDTLSE REAGVVSMRF GLTDGQPKTL DEIGKVYGVT RERIRQIESK
TMSKLRHPSR SQVLRDYLD
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