| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_1740 |
|---|
| Symbol | |
|---|
| ID | 8333083 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 1970279 |
|---|
| End bp | 1971952 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644954890 |
|---|
| Product | natural resistance-associated macrophage protein |
|---|
| Protein accession | YP_003112502 |
|---|
| Protein GI | 256390938 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1914] Mn2+ and Fe2+ transporters of the NRAMP family |
|---|
| TIGRFAM ID | [TIGR01197] NRAMP (natural resistance-associated macrophage protein) metal ion transporters |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.149953 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.200445 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACGG CCACGCTCAA CAGCGAAGTC CGCGAGACGA CGCACCACGG CGCACATCAG
TGCGCGGTAC TCGATGAAGC ACACGTCGGC GACATCAAAG GCGCGTTCGG CACCATCAAG
CTCGACGACG ACGGCGCGCG CCGCGGACTG TCGGCCAAGC TCAAGACCCT GCTGGCGATC
GTCGGGCCCG GGCTGATCGT GATGGTCGGC GACAACGACG CCGGCGCGTT CGCCACCTAC
GGGCAGGCCG GGCACGACTT CGGCACCAAG CTGTTGTGGA CGCTTCTGCT GCTGGTCCCG
GTGTTGTATG TGAACCAGGA GATGGTGTTG CGCCTCGGCG CGGTCACCGG CGTCGGGCAC
GCCCGGCTCA TCTTCGAGCG CTTCGGTACG TTCTGGGGCG CGTTCAGCGT CATCGACCTC
TTCCTTCTCA ATGCTCTGAC GCTGGTCACC GAGTTCATCG GCATCACGTT GGCGACCAGC
TATCTGGGGC TGCCGAAGGT GCCCTCGGTG TTGATGGCCG CGCTGGTGAT CGTGGCGGCG
GCGATGAGCG GCTCGTTCCA GCGGTTCGAG CGGATCGCGC TGACGCTGTG CGTGGGGTCG
CTGCTGCTGA TCCCGATCTC GATCATGGCG CACCCCAGCG CGGGGACCAT GGCGCACGGC
TTCGTCACCC CGGCCCTGCC CGGCGGTTCG GGCCACATGG CCACGGTGAT GCTGGTCGTG
ATCGGCATCG TGGGCACGAC GGTCGCGCCG TGGCAGCTGT TCTTCCAGCA GAGCTATGTG
ATCGACAAGC GCATCACGCC GCGCTTCATG AAGTACGAGA AGGCCGATCT GGGCATCGGC
ATCGTGGTGG TCGTGGTCGG CGCGGCGGCG ACGATCGGTC TGGGCGCGGT GGCCGCGGCG
CACCTGTCAG GGTCCTTCAC CGACGCCGCC GACGTGGCGC GCGGGCTGAC CGTCTATGGC
GGCCGGGTCC TGGGCGACAT GTTCGCCGTC GCACTGCTGG ACGCCTCGAT CATCGGCGCG
TTCGCGGTAT CGCTGTCCAC CGCCTACGCG ATGGGCGACT GCTTCAAGAT CAACCACTCG
CTGCACCGCG GAGTGAAGCA GGCCAAGGGT TTCTACGCGG TCTACGCCGG GATCATCGCC
TTCGCCGCGA CGATCGTGCT GGTGGCCAGC GACCACGTGC AGGGCGTGCT CACCGTCGGC
GTGCAGGCGC TGGCCGGCGT GCTGCTGCCC TCGGCCTCGG TGTATCTGCT GCTGCTGTGC
GTGGACAAGC ATGTCCTCGG GCCCTGGGTC AACAACCGCC GGACCACGGT GTTCACCGGC
GGCGTGATCG CGGTCCTGGT GGCGCTGTCG CTGGTGCTGA CCGGCTCGGT GCTGGACCAG
AACATCACCG CCGGGCAGAT CGAGGCGATC CTCGCCGGCT GCGCGGTCGT CGCGCTGGCC
TTCGGCGCCT GGCTGGGTGT CAAGGCTCTG CGAGCCCGCC GCGCGCCGGG CTACGTCGCC
GAGACCATCG ACCGCTCCGG CCGGGACGAG TGGCGGACGC CGCCGCTGGC ACAGCTGGGC
CAGGTCCGGT TCTCCACCGG GACCCGCGTC GGCCTCGCCG TGCTGCGCAC CTACCTCGCG
GTGGCGACGG TGCTGGTCGT GGTCAAGCTG GTCTCGATGA TGCTCGGGCA CTGA
|
|---|
| Protein sequence | MTTATLNSEV RETTHHGAHQ CAVLDEAHVG DIKGAFGTIK LDDDGARRGL SAKLKTLLAI
VGPGLIVMVG DNDAGAFATY GQAGHDFGTK LLWTLLLLVP VLYVNQEMVL RLGAVTGVGH
ARLIFERFGT FWGAFSVIDL FLLNALTLVT EFIGITLATS YLGLPKVPSV LMAALVIVAA
AMSGSFQRFE RIALTLCVGS LLLIPISIMA HPSAGTMAHG FVTPALPGGS GHMATVMLVV
IGIVGTTVAP WQLFFQQSYV IDKRITPRFM KYEKADLGIG IVVVVVGAAA TIGLGAVAAA
HLSGSFTDAA DVARGLTVYG GRVLGDMFAV ALLDASIIGA FAVSLSTAYA MGDCFKINHS
LHRGVKQAKG FYAVYAGIIA FAATIVLVAS DHVQGVLTVG VQALAGVLLP SASVYLLLLC
VDKHVLGPWV NNRRTTVFTG GVIAVLVALS LVLTGSVLDQ NITAGQIEAI LAGCAVVALA
FGAWLGVKAL RARRAPGYVA ETIDRSGRDE WRTPPLAQLG QVRFSTGTRV GLAVLRTYLA
VATVLVVVKL VSMMLGH
|
|---|
| |