Gene Caci_1696 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_1696 
Symbol 
ID8333039 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp1924562 
End bp1926166 
Gene Length1605 bp 
Protein Length534 aa 
Translation table11 
GC content69% 
IMG OID644954846 
Productdrug resistance transporter, EmrB/QacA subfamily 
Protein accessionYP_003112458 
Protein GI256390894 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.218803 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCGGG AGACCCTGCA GAGGCGCCGG TGGGCGATTC TCGGTGTACT CGTCTTCAGC 
TTGCTCGTGG TCGTCCTGGA CAACACGATC CTGAACGTCG CGCTCAAGAT CATCTCGCAG
CCCGAGAACG ATCCGCACCA GCCCGGTCTG GGTGCCTCCC AGTCTGATCT GGAGTGGGCG
ATCAACTCCT ACACGCTGGT GTTCGCCGGC CTGCTGTTCA CCTTCGGGAT CGTCGGCGAC
CGGTTCGGGC GCAAGAAGAT CCTGATGGCC GGCATGGTCG GGTTCGGGAT CGCCTCGGTG
CTGTGCGCCT ATGCCGGCAG TCCCGGCGCG CTGATCGCCA CCCGGGCCGT GATGGGCTTC
TTCGGCGCCG CGATCATGCC CGCCACGCTG GCCATCATCG CCAACGTCTT CGAGCCCAAG
GAGCAGCCCA AGGCGATCGG CATCTGGGCC GGCGGCGTGG GGCTGGGCGT GGCCATCGGC
CCGGTGCTCG GCGGTCTGCT GCTGGACCAC TTCTGGTGGG GCTCGGTCTT CCTGATCAAC
GTGCCGATCA TCGTCGTCGC GCTGATCGCC ATGGCGATCC TGGTGCCGGA CTCCAAGAAC
CCCAAGCCGG GCAAGCTGGA CCCGCTGGGC GTGTTCCTGT CGATGGCCGG GATCGTCGTG
TTCGTCTACG GCATCATCCG CGGCGCCGAC GTCGGCTGGG GCAACCCGCA GATCTGGGGC
TCGCTGGCCG CCGGCATCCT GCTGTCCGCC GGGTTCGTGT TCTGGGAACT GCGGACCGAC
CACCCCGCGC TGGACGTGCG GCTGTTCCGC AGCTCGCGGC CCTTCTCGGC CTCGGTCATG
CTGGTCGGCC TGTCCTTCTT CGCGATGATG GGCGTGCTGT TCTTCCTGTC CTTCTACCTG
CAGTCGGTGC TGAACTACAG CCCGCTGAAG GCCGGTCTGT TCCTGACGCC GTTCGCGCTG
GCGCAGCTGA TCTTCTCGCC GCTGTCGGCG CGGCTGGTGC AGCGCTTCGG GGCGCGCGCG
GTGTCCACCT TCGGCATGGT GGTCATCGGT GTCACGTTCC TGATGTACCA GTTCGTGAAC
CAGACCTCGG CGGCCTGGCT GCTGCTGCTG ATCTTCTTCC TGCAGGGCAT GGGCATGGCG
AACGTGATGC CGCCGGCGAC CACGACGATC ATGACCTCGC TGCCCCGGGA GAAGGCCGGC
GTCGGCTCCT CGGTGAGCAA CACCGTCCGG CAGGTCGGCG GCGCGCTGGG CGTCGCGGTG
CTGGGCACGC TGCTCACCAC GGCCTACCGC GGCCGGATGG AGGCTCCGCT CAGGACGGTC
GTGCCGAACC CCTCGGCGCT GCACGACATC GACGGCTCGA TCCAGGCCAC CAAGGGCGCC
GGCGAGCACG TCCCGGTGCT GGCGCACTTC TACCCGCAGG CCGACGCCGC GTTCATCCAC
GCGATGCACG TGACCGTGAC GGTCTCGGCG ATCGTCGCCT TCCTCGCCGC GATCGTGTCG
CTGACCTGGC TGCCGCGAAA GTCCGCCGGC GCACCGGCCG GACCGCCGCA GCGACAGGCC
GGCGCTGACG CCTCGGCCGC GGCCGAAGCC GCCGGAGTGG CCTGA
 
Protein sequence
MDRETLQRRR WAILGVLVFS LLVVVLDNTI LNVALKIISQ PENDPHQPGL GASQSDLEWA 
INSYTLVFAG LLFTFGIVGD RFGRKKILMA GMVGFGIASV LCAYAGSPGA LIATRAVMGF
FGAAIMPATL AIIANVFEPK EQPKAIGIWA GGVGLGVAIG PVLGGLLLDH FWWGSVFLIN
VPIIVVALIA MAILVPDSKN PKPGKLDPLG VFLSMAGIVV FVYGIIRGAD VGWGNPQIWG
SLAAGILLSA GFVFWELRTD HPALDVRLFR SSRPFSASVM LVGLSFFAMM GVLFFLSFYL
QSVLNYSPLK AGLFLTPFAL AQLIFSPLSA RLVQRFGARA VSTFGMVVIG VTFLMYQFVN
QTSAAWLLLL IFFLQGMGMA NVMPPATTTI MTSLPREKAG VGSSVSNTVR QVGGALGVAV
LGTLLTTAYR GRMEAPLRTV VPNPSALHDI DGSIQATKGA GEHVPVLAHF YPQADAAFIH
AMHVTVTVSA IVAFLAAIVS LTWLPRKSAG APAGPPQRQA GADASAAAEA AGVA