Gene Caci_1616 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_1616 
Symbol 
ID8332959 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp1836266 
End bp1836946 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content71% 
IMG OID644954766 
Producttwo component transcriptional regulator, LuxR family 
Protein accessionYP_003112378 
Protein GI256390814 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0231149 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.0629914 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGGTCC GCGTCCTGCT TGCCGACGAC CAGCCTCTGG TCCGTGCCGC TTTGGCGATG 
GCGATCGCCG ACCTGCCCGA CATCGAGGTC GCCGGGGAGG CCGGCGACGG GCTGCACGCG
GTGCGGATGA CCCGCGAGCT GTGCCCCGAC GTGGTCGTCA TGGACATCCG CATGCCCGGG
ACCGACGGCA TCGAGGCGAC GCGGATGATC ACCGGCGGCG CCGGGAGCGC CCGGGTCATC
GTTCTGACGA CCTTCGACGA TGACGACAAC GTCTACAACG CGTTGCGCGC CGGTGCGTCG
GGATTCCTCG TCAAGGACAT GGCGGTCAGC GACATCCTCG CCGGCATCCG CGTGGTCGCC
GCCGGTGACG CGCTGATCGC CCCGAAGGTC ACCCGGCGCC TGATCGCGCA GTTCGCCAGC
CGTCCGCGTC CCGCGACCGC GCCGCCGACG GTGCCCGCGG CGCCTCCCCG CCGGATCGAG
GCGATCACCG GCCGCGAACG CGAGGCGCTG ACCTTCGTCG GCCGCGGACT GTCGAACGCC
GAGATCCAGG TCGCGATGGG CATCAGCGCC GCGACCGTCA AAACCTACGT GACCAGGCTG
CTCGCCAAGC TCGACGCCCG CGACCGCGCG CAGCTCGTCA TCGCCGCCTA CGAGAACGGC
CTCGTCACAC CTGGCGAGTA G
 
Protein sequence
MPVRVLLADD QPLVRAALAM AIADLPDIEV AGEAGDGLHA VRMTRELCPD VVVMDIRMPG 
TDGIEATRMI TGGAGSARVI VLTTFDDDDN VYNALRAGAS GFLVKDMAVS DILAGIRVVA
AGDALIAPKV TRRLIAQFAS RPRPATAPPT VPAAPPRRIE AITGREREAL TFVGRGLSNA
EIQVAMGISA ATVKTYVTRL LAKLDARDRA QLVIAAYENG LVTPGE